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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
(Q24545170)
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From Wikidata
scientific article published on September 1, 1997
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English
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
scientific article published on September 1, 1997
Statements
instance of
scholarly article
0 references
title
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
(English)
0 references
main subject
database
0 references
BLAST
0 references
Using the Basic Local Alignment Search Tool (BLAST)
0 references
PSI-BLAST
0 references
sequence alignment
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
software
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
fact database
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
author
David J. Lipman
series ordinal
7
0 references
Webb Miller
series ordinal
6
0 references
author name string
S. F. Altschul
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
T. L. Madden
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
A. A. Schäffer
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
J. Zhang
series ordinal
4
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
Z. Zhang
series ordinal
5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
publication date
1 September 1997
0 references
language of work or name
English
0 references
number of pages
14
1 reference
based on heuristic
inferred from page(s)
full work available at URL
https://academic.oup.com/nar/article-pdf/25/17/3389/3639509/25-17-3389.pdf
file format
PDF
online access status
open access
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
https://europepmc.org/articles/PMC146917
file format
HTML
online access status
open access
content deliverer
Europe PubMed Central
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
https://europepmc.org/articles/PMC146917?pdf=render
file format
PDF
online access status
open access
content deliverer
Europe PubMed Central
1 reference
stated in
Europe PubMed Central
PubMed publication ID
9254694
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9254694
retrieved
11 November 2024
http://academic.oup.com/nar/article-pdf/25/17/3389/3639509/25-17-3389.pdf
file format
PDF
1 reference
stated in
Crossref
DOI
10.1093/NAR/25.17.3389
reference URL
https://api.crossref.org/works/10.1093/NAR/25.17.3389
retrieved
11 November 2024
published in
Nucleic Acids Research
0 references
volume
25
0 references
issue
17
0 references
page(s)
3389-3402
0 references
publication type of scholarly work
review article
1 reference
stated in
Europe PubMed Central
cites work
Identification of a RING protein that can interact in vivo with the BRCA1 gene product
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The FHIT gene, spanning the chromosome 3p14.2 fragile site and renal carcinoma-associated t(3;8) breakpoint, is abnormal in digestive tract cancers
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Applications and statistics for multiple high-scoring segments in molecular sequences
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Profile analysis: detection of distantly related proteins
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24 March 2017
Improved tools for biological sequence comparison
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24 March 2017
Identifying protein-binding sites from unaligned DNA fragments
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24 March 2017
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
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24 March 2017
Amino acid substitution matrices from protein blocks
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24 March 2017
Basic local alignment search tool
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24 March 2017
Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii
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24 March 2017
Identification of common molecular subsequences
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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24 March 2017
A general method applicable to the search for similarities in the amino acid sequence of two proteins
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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24 March 2017
Isolation, characterization, and inactivation of the APA1 gene encoding yeast diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase
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24 March 2017
A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1
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24 March 2017
Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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24 March 2017
Insertional mutagenesis in zebrafish identifies two novel genes, pescadillo and dead eye, essential for embryonic development
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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24 March 2017
Rapid similarity searches of nucleic acid and protein data banks
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PubMed Central
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24 March 2017
Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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7 April 2017
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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7 April 2017
A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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7 April 2017
From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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7 April 2017
Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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7 April 2017
Information content of binding sites on nucleotide sequences
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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7 April 2017
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1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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1 reference
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PubMed Central
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146917
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PubMed Central
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1 reference
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1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/9254694
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based on heuristic
inferred from PubMed ID database lookup
Using substitution probabilities to improve position-specific scoring matrices
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
GenBank
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
[Hemoglobins, XXXIII. Note on the Sequence of the hemoglobins of the horse (author's transl)]
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Position-based sequence weights
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The amino acid sequence of leghaemoglobin I from root nodules of broad bean (Vicia faba L.)
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identification of protein sequence homology by consensus template alignment
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Optimal sequence alignment using affine gap costs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
New structure--novel fold?
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/9254694
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/25.17.3389
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
58354
Mendeley publication ID
b03ca69e-b062-3072-887d-8a4c0fd08058
1 reference
reference URL
https://www.mendeley.com/catalogue/b03ca69e-b062-3072-887d-8a4c0fd08058/
title
Gapped BLAST and PSI-BLAST: A new... preview & related info | Mendeley
(British English)
retrieved
9 October 2022
OpenCitations bibliographic resource ID
58354
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
58354
PMC publication ID
146917
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
58354
PubMed publication ID
9254694
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
58354
ResearchGate publication ID
277548372
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