8OL5|pdb_00008ol5
Murine type II Abeta fibril from ARTE10 mouse
- PDB DOI: https://doi.org/10.2210/pdb8OL5/pdb
- EM Map EMD-16949: EMDB EMDataResource
- Classification: PROTEIN FIBRIL
- Organism(s): Homo sapiens
- Expression System: Mus musculus
- Mutation(s): No
- Deposited: 2023-03-30 Released: 2023-11-29
- Deposition Author(s): Zielinski, M.,Peralta Reyes, F.S.,Gremer, L.,Schemmert, S.,Frieg, B.,Willuweit, A.,Donner, L.,Elvers, M.,Nilsson, L.N.G.,Syvanen, S.,Sehlin, D.,Ingelsson, M.,Willbold, D.,Schroeder, G.F.
- Funding Organization(s): German Federal Ministry for Education and Research, Swedish Research Council, Helmholtz Association
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.40 Å
- Aggregation State: FILAMENT
- Reconstruction Method: HELICAL
wwPDB Validation 3D Report Full Report
Download MendeleyCryo-EM of A beta fibrils from mouse models find tg-APP ArcSwe fibrils resemble those found in patients with sporadic Alzheimer's disease.
Zielinski, M., Peralta Reyes, F.S., Gremer, L., Schemmert, S., Frieg, B., Schafer, L.U., Willuweit, A., Donner, L., Elvers, M., Nilsson, L.N.G., Syvanen, S., Sehlin, D., Ingelsson, M., Willbold, D., Schroder, G.F.(2023) Nat Neurosci 26: 2073-2080
- PubMed: 37973869 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1038/s41593-023-01484-4
- Primary Citation of Related Structures:
8OL2,8OL3,8OL5,8OL6,8OL7,8OLG,8OLN,8OLO,8OLQ - PubMed Abstract:
The use of transgenic mice displaying amyloid-β (Aβ) brain pathology has been essential for the preclinical assessment of new treatment strategies for Alzheimer's disease. However, the properties of Aβ in such mice have not been systematically compared to Aβ in the brains of patients with Alzheimer's disease. Here, we determined the structures of nine ex vivo Aβ fibrils from six different mouse models by cryogenic-electron microscopy. We found novel Aβ fibril structures in the APP/PS1, ARTE10 and tg-SwDI models, whereas the human type II filament fold was found in the ARTE10, tg-APPSwe and APP23 models. The tg-APPArcSwe mice showed an Aβ fibril whose structure resembles the human type I filament found in patients with sporadic Alzheimer's disease. A detailed assessment of the Aβ fibril structure is key to the selection of adequate mouse models for the preclinical development of novel plaque-targeting therapeutics and positron emission tomography imaging tracers in Alzheimer's disease.
Organizational Affiliation:
Institute of Biological Information Processing, Structural Biochemistry (IBI-7), Forschungszentrum Jülich, Jülich, Germany.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report
Global Symmetry: Cyclic - C2 (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Biological Assembly Evidence: electron microscopy
Macromolecule Content
- Total Structure Weight: 45.2 kDa
- Atom Count: 2,260
- Modelled Residue Count: 310
- Deposited Residue Count: 420
- Unique protein chains: 1
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Amyloid-beta protein 42 | 42 | Homo sapiens | Mutation(s): 0 Gene Names: APP, A4, AD1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05067 (Homo sapiens) Explore P05067 Go to UniProtKB: P05067 | |||||
PHAROS: P05067 GTEx: ENSG00000142192 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05067 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.40 Å
- Aggregation State: FILAMENT
- Reconstruction Method: HELICAL
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.20.1 |
| RECONSTRUCTION | RELION | 3.1 |
Deposition Data
- Released Date: 2023-11-29 Deposition Author(s): Zielinski, M.,Peralta Reyes, F.S.,Gremer, L.,Schemmert, S.,Frieg, B.,Willuweit, A.,Donner, L.,Elvers, M.,Nilsson, L.N.G.,Syvanen, S.,Sehlin, D.,Ingelsson, M.,Willbold, D.,Schroeder, G.F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Federal Ministry for Education and Research | Germany | 16LW028 |
| Swedish Research Council | Sweden | 2021-02793 |
| Swedish Research Council | Sweden | 2021-01083 |
| Swedish Research Council | Sweden | 2021-03524 |
| Helmholtz Association | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-11-29
Type: Initial release - Version 1.1: 2023-12-13
Changes: Database references
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RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.