Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2018) Elife 7
Fast inhibitory neurotransmission in the mammalian nervous system is largely mediated by GABAA receptors, chloride-selective members of the superfamily of pentameric Cys-loop receptors. Native GABAA receptors are heteromeric assemblies sensitive to many important drugs, from sedatives to anesthetics and anticonvulsant agents, with mutant forms of GABAA receptors implicated in multiple neurological diseases. Despite the profound importance of heteromeric GABAA receptors in neuroscience and medicine, they have proven recalcitrant to structure determination. Here we present the structure of a tri-heteromeric α1β1γ2SEM GABAA receptor in complex with GABA, determined by single particle cryo-EM at 3.1-3.8 Å resolution, elucidating molecular principles of receptor assembly and agonist binding. Remarkable N-linked glycosylation on the α1 subunit occludes the extracellular vestibule of the ion channel and is poised to modulate receptor assembly and perhaps ion channel gating. Our work provides a pathway to structural studies of heteromeric GABAA receptors and a framework for rational design of novel therapeutic agents.
Vollum Institute, Oregon Health and Science University, Portland, United States.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ABU) |Predict Membrane
Biological assembly 1 assigned by authors and generated by PISA (software)
Macromolecule Content
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-aminobutyric acid receptor subunit gamma-2 | A [auth D] | 490 | Rattus norvegicus | Mutation(s): 0 Gene Names: Gabrg2 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P18508 (Rattus norvegicus) Explore P18508 Go to UniProtKB: P18508 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P18508 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-aminobutyric acid receptor subunit alpha-1,Gamma-aminobutyric acid receptor subunit alpha-1 | B [auth C], C [auth A] | 402 | Rattus norvegicus | Mutation(s): 0 Gene Names: Gabra1, Gabra-1 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P62813 (Rattus norvegicus) Explore P62813 Go to UniProtKB: P62813 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62813 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | Go to GlyGen: P62813-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-aminobutyric acid receptor subunit beta-1,Gamma-aminobutyric acid receptor subunit beta-1 | D [auth E], E [auth B] | 384 | Rattus norvegicus | Mutation(s): 0 Gene Names: Gabrb1, Gabrb-1 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P15431 (Rattus norvegicus) Explore P15431 Go to UniProtKB: P15431 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15431 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: P15431-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan: G81315DD GlyCosmos: G81315DD GlyGen: G81315DD |
Entity ID: 5 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G | 7 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan: G07617FP GlyCosmos: G07617FP GlyGen: G07617FP |
Entity ID: 6 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | H, J | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE |
Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ABU Query on ABU Download Ideal Coordinates CCD File | L [auth C], M [auth A], N [auth A] | GAMMA-AMINO-BUTANOIC ACID C4 H9 N O2 BTCSSZJGUNDROE-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.13 |
RECONSTRUCTION | RELION | 2.1 |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM100400 |
Howard Hughes Medical Institute (HHMI) | United States | -- |
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.