Experimental Data Snapshot
Starting Model:experimental
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(2016) N Engl J Med 374: 54
In a patient who had metastatic anaplastic lymphoma kinase (ALK)-rearranged lung cancer, resistance to crizotinib developed because of a mutation in the ALK kinase domain. This mutation is predicted to result in a substitution of cysteine by tyrosine at amino acid residue 1156 (C1156Y). Her tumor did not respond to a second-generation ALK inhibitor, but it did respond to lorlatinib (PF-06463922), a third-generation inhibitor. When her tumor relapsed, sequencing of the resistant tumor revealed an ALK L1198F mutation in addition to the C1156Y mutation. The L1198F substitution confers resistance to lorlatinib through steric interference with drug binding. However, L1198F paradoxically enhances binding to crizotinib, negating the effect of C1156Y and resensitizing resistant cancers to crizotinib. The patient received crizotinib again, and her cancer-related symptoms and liver failure resolved. (Funded by Pfizer and others; ClinicalTrials.gov number, NCT01970865.).
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (VGH)
Biological assembly 1 assigned by authors and generated by PISA (software)
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ALK TYROSINE KINASE RECEPTOR | 327 | Homo sapiens | Mutation(s): 2  EC: 2.7.10.1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UM73 (Homo sapiens) Explore Q9UM73  Go to UniProtKB:  Q9UM73 | |||||
PHAROS:  Q9UM73 GTEx:  ENSG00000171094  | |||||
Entity Groups  | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UM73 | ||||
Sequence AnnotationsExpand | |||||
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| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| VGH Query on VGH Download Ideal Coordinates CCD File  | B [auth A] | 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine C21 H22 Cl2 F N5 O KTEIFNKAUNYNJU-GFCCVEGCSA-N | |||
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.541 | α = 90 |
| b = 57.449 | β = 90 |
| c = 104.787 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNX | refinement |
| autoPROC | data reduction |
| Aimless | data scaling |
| CNX | phasing |
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.