Experimental Data Snapshot
(2013) Nat Struct Mol Biol 20: 1098-1105
N-terminal acetylation is ubiquitous among eukaryotic proteins and controls a myriad of biological processes. Of the N-terminal acetyltransferases (NATs) that facilitate this cotranslational modification, the heterodimeric NatA complex has the most diversity for substrate selection and modifies the majority of all N-terminally acetylated proteins. Here, we report the X-ray crystal structure of the 100-kDa holo-NatA complex from Schizosaccharomyces pombe, in the absence and presence of a bisubstrate peptide-CoA-conjugate inhibitor, as well as the structure of the uncomplexed Naa10p catalytic subunit. The NatA-Naa15p auxiliary subunit contains 13 tetratricopeptide motifs and adopts a ring-like topology that wraps around the NatA-Naa10p subunit, an interaction that alters the Naa10p active site for substrate-specific acetylation. These studies have implications for understanding the mechanistic details of other NAT complexes and how regulatory subunits modulate the activity of the broader family of protein acetyltransferases.
1] Program in Gene Expression and Regulation, Wistar Institute, Philadelphia, Pennsylvania, USA. [2] Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ACO)
Biological assembly 1 assigned by authors.
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ACO)
Biological assembly 2 assigned by authors.
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ACO)
Biological assembly 3 assigned by authors.
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ACO)
Biological assembly 4 assigned by authors.
Macromolecule Content
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
N-terminal acetyltransferase A complex subunit nat1 | 731 | Schizosaccharomyces pombe 972h- | Mutation(s): 0  Gene Names: nat1, SPCC338.07c | ![]() | |
UniProt | |||||
Find proteins for O74985 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore O74985  Go to UniProtKB:  O74985 | |||||
Entity Groups  | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O74985 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
N-terminal acetyltransferase A complex catalytic subunit ard1 | 156 | Schizosaccharomyces pombe 972h- | Mutation(s): 0  Gene Names: ard1, SPAC15E1.08 EC: 2.3.1.88 (PDB Primary Data), 2.3.1.255 (UniProt) | ![]() | |
UniProt | |||||
Find proteins for Q9UTI3 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9UTI3  Go to UniProtKB:  Q9UTI3 | |||||
Entity Groups  | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UTI3 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 80.739 | α = 80.28 |
b = 119.692 | β = 76.85 |
c = 132.024 | γ = 70.65 |
Software Name | Purpose |
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HKL-2000 | data collection |
SOLVE | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.