Experimental Data Snapshot
Starting Model:experimental
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(2012) Cell Rep 2: 902-913
2',5'-linked oligoadenylates (2-5As) serve as conserved messengers of pathogen presence in the mammalian innate immune system. 2-5As induce self-association and activation of RNase L, which cleaves cytosolic RNA and promotes the production of interferons (IFNs) and cytokines driven by the transcription factors IRF-3 and NF-κB. We report that human RNase L is activated by forming high-order complexes, reminiscent of the mode of activation of the phylogenetically related transmembrane kinase/RNase Ire1 in the unfolded protein response. We describe crystal structures determined at 2.4 Å and 2.8 Å resolution, which show that two molecules of 2-5A at a time tether RNase L monomers via the ankyrin-repeat (ANK) domain. Each ANK domain harbors two distinct sites for 2-5A recognition that reside 50 Å apart. These data reveal a function for the ANK domain as a 2-5A-sensing homo-oligomerization device and describe a nonlinear, ultrasensitive regulation in the 2-5A/RNase L system poised for amplification of the IFN response.
Department of Molecular Biology, Princeton University, 216 Schultz Laboratory, Princeton, NJ 08540, USA.
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (25A)
Biological assembly 1 generated by PISA (software)
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (25A)
Biological assembly 2 generated by PISA (software)
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (25A)
Biological assembly 3 generated by PISA (software)
 Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (25A)
Biological assembly 4 generated by PISA (software)
Macromolecule Content
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
2-5A-dependent ribonuclease | 337 | Homo sapiens | Mutation(s): 0  Gene Names: RNASEL, RNS4 EC: 3.1.26 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q05823 (Homo sapiens) Explore Q05823  Go to UniProtKB:  Q05823 | |||||
PHAROS:  Q05823 GTEx:  ENSG00000135828  | |||||
Entity Groups  | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q05823 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
25A Query on 25A Download Ideal Coordinates CCD File 
| E [auth A], F [auth B], G [auth C], H [auth D] | 5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE C30 H38 N15 O19 P3 SIIZPVYVXNXXQG-UQTMIEBXSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 62.98 | α = 90 |
b = 164.11 | β = 100.2 |
c = 86.22 | γ = 90 |
Software Name | Purpose |
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CBASS | data collection |
PHASER | phasing |
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
SCALA | data scaling |
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.