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- Structure Factors (CIF)
- Structure Factors (CIF - gz)
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- Validation (CIF - gz)
- Validation 2fo-fc coefficients (CIF - gz)
- Validation fo-fc coefficients (CIF - gz)
- Biological Assembly 1 (CIF - gz)
- Biological Assembly 2 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
- Biological Assembly 2 (PDB - gz)
3K6P|pdb_00003k6p
Estrogen Related Receptor alpha in Complex with an Ether Based Ligand
- PDB DOI: https://doi.org/10.2210/pdb3K6P/pdb
- Classification: HORMONE RECEPTOR
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-10-09 Released: 2010-10-20
- Deposition Author(s): Abad, M.C.,Patch, R.J.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.248 (Depositor), 0.240 (DCC)
- R-Value Work: 0.211 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.214 (Depositor)
Starting Model:experimental
View more details
Download MendeleyDevelopment of Diaryl Ether based ligands for Estrogen Related Receptor alpha as Potential Anti-Diabetic Agents.
Patch, R.J., Searle, L.L., Kim, A.J., De, D., Zhu, X., Askari, H.B., O'Neill, J.C., Abad, M.C., Rentzeperis, D., Geisler, J.G.To be published.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (5FB)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (5FB)
Global Symmetry: Cyclic - C2 (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2
Find Similar Assemblies
Biological assembly 2 generated by PISA (software)
Macromolecule Content
- Total Structure Weight: 27.59 kDa
- Atom Count: 1,908
- Modeled Residue Count: 226
- Deposited Residue Count: 248
- Unique protein chains: 1
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Steroid hormone receptor ERR1 | 248 | Homo sapiens | Mutation(s): 0 Gene Names: ERR1, ESRL1, ESRRA, NR3B1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11474 (Homo sapiens) Explore P11474 Go to UniProtKB: P11474 | |||||
PHAROS: P11474 GTEx: ENSG00000173153 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P11474 | ||||
Sequence AnnotationsExpand | |||||
| |||||
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5FB Query on 5FB Download Ideal Coordinates CCD File | B [auth A] | 4-(4-{[(5R)-2,4-dioxo-1,3-thiazolidin-5-yl]methyl}-2-methoxyphenoxy)-3-(trifluoromethyl)benzonitrile C19 H13 F3 N2 O4 S IOTPZQVXYNGZSS-MRXNPFEDSA-N |  | ||
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.248 (Depositor), 0.240 (DCC)
- R-Value Work: 0.211 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.214 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.007 | α = 90 |
| b = 103.007 | β = 90 |
| c = 110.017 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| CNS | refinement |
| PROTEUM PLUS | data collection |
| PROTEUM PLUS | data reduction |
| PROTEUM PLUS | data scaling |
| CNS | phasing |
Deposition Data
- Released Date: 2010-10-20 Deposition Author(s): Abad, M.C.,Patch, R.J.
Revision History (Full details and data files)
- Version 1.0: 2010-10-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2019-07-17
Changes: Data collection, Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
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