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- Biological Assembly 1 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
2UWP|pdb_00002uwp
Factor Xa inhibitor complex
- PDB DOI: https://doi.org/10.2210/pdb2UWP/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Mutation(s): No
- Deposited: 2007-03-22 Released: 2007-05-08
- Deposition Author(s): Young, R.J.,Brown, D.,Burns-Kurtis, C.L.,Chan, C.,Convery, M.A.,Hubbard, J.A.,Kelly, H.A.,Pateman, A.J.,Patikis, A.,Senger, S.,Shah, G.P.,Toomey, J.R.,Watson, N.S.,Zhou, P.,Thorpe, J.H.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.212 (Depositor)
- R-Value Work: 0.185 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.186 (Depositor)
Starting Model:experimental
View more details
Download MendeleySelective and Dual Action Orally Active Inhibitors of Thrombin and Factor Xa.
Young, R.J., Brown, D., Burns-Kurtis, C.L., Chan, C., Convery, M.A., Hubbard, J.A., Kelly, H.A., Pateman, A.J., Patikis, A., Senger, S., Shah, G.P., Toomey, J.R., Watson, N.S., Zhou, P.(2007) Bioorg Med Chem Lett 17: 2927
- PubMed: 17420122 Search on PubMed
- DOI: https://doi.org/10.1016/j.bmcl.2007.03.080
- Primary Citation of Related Structures:
2UWL,2UWO,2UWP - PubMed Abstract:
The synthetic entry to new classes of dual fXa/thrombin and selective thrombin inhibitors with significant oral bioavailability is described. This was achieved through minor modifications to the sulfonamide group in our potent and selective fXa inhibitor (E)-2-(5-chlorothien-2-yl)-N-{(3S)-1-[(1S)-1-methyl-2-(morpholin-4-yl)-2-oxoethyl]-2-oxopyrrolidin-3-yl}ethenesulfonamide and these observed activity changes have been rationalised using structural studies.
- GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, UK. Rob.J.Young@gsk.com
Organizational Affiliation:
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (894)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Hetero 2-mer - A1B1
Find Similar Assemblies
Biological assembly 1 assigned by authors and generated by PQS (software)
Macromolecule Content
- Total Structure Weight: 44.28 kDa
- Atom Count: 2,507
- Modeled Residue Count: 287
- Deposited Residue Count: 388
- Unique protein chains: 2
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| COAGULATION FACTOR X | 254 | Homo sapiens | Mutation(s): 0 EC: 3.4.21.6 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00742 (Homo sapiens) Explore P00742 Go to UniProtKB: P00742 | |||||
PHAROS: P00742 GTEx: ENSG00000126218 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00742 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| COAGULATION FACTOR X | 134 | Homo sapiens | Mutation(s): 0 EC: 3.4.21.6 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00742 (Homo sapiens) Explore P00742 Go to UniProtKB: P00742 | |||||
PHAROS: P00742 GTEx: ENSG00000126218 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00742 | ||||
Sequence AnnotationsExpand | |||||
| |||||
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 894 Query on 894 Download Ideal Coordinates CCD File | C [auth A] | 2-(5-CHLORO-2-THIENYL)-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}ETHANESULFONAMIDE C17 H24 Cl N3 O5 S2 IAUZEBLXCOCAFL-JSGCOSHPSA-N |  | ||
| CA Query on CA Download Ideal Coordinates CCD File | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| MG Query on MG Download Ideal Coordinates CCD File | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.212 (Depositor)
- R-Value Work: 0.185 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.186 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.448 | α = 90 |
| b = 71.963 | β = 90 |
| c = 78.671 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Deposition Data
- Released Date: 2007-05-08 Deposition Author(s): Young, R.J.,Brown, D.,Burns-Kurtis, C.L.,Chan, C.,Convery, M.A.,Hubbard, J.A.,Kelly, H.A.,Pateman, A.J.,Patikis, A.,Senger, S.,Shah, G.P.,Toomey, J.R.,Watson, N.S.,Zhou, P.,Thorpe, J.H.
Revision History (Full details and data files)
- Version 1.0: 2007-05-08
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description - Version 1.4: 2024-11-13
Changes: Structure summary
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RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.