Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2006) J Biological Chem 281: 24934-24944
Serum transferrin reversibly binds iron in each of two lobes and delivers it to cells by a receptor-mediated, pH-dependent process. The binding and release of iron result in a large conformational change in which two subdomains in each lobe close or open with a rigid twisting motion around a hinge. We report the structure of human serum transferrin (hTF) lacking iron (apo-hTF), which was independently determined by two methods: 1) the crystal structure of recombinant non-glycosylated apo-hTF was solved at 2.7-A resolution using a multiple wavelength anomalous dispersion phasing strategy, by substituting the nine methionines in hTF with selenomethionine and 2) the structure of glycosylated apo-hTF (isolated from serum) was determined to a resolution of 2.7A by molecular replacement using the human apo-N-lobe and the rabbit holo-C1-subdomain as search models. These two crystal structures are essentially identical. They represent the first published model for full-length human transferrin and reveal that, in contrast to family members (human lactoferrin and hen ovotransferrin), both lobes are almost equally open: 59.4 degrees and 49.5 degrees rotations are required to open the N- and C-lobes, respectively (compared with closed pig TF). Availability of this structure is critical to a complete understanding of the metal binding properties of each lobe of hTF; the apo-hTF structure suggests that differences in the hinge regions of the N- and C-lobes may influence the rates of iron binding and release. In addition, we evaluate potential interactions between apo-hTF and the human transferrin receptor.
NIDDK, National Institutes of Health, Bethesda, Maryland 20892, USA.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (CIT)
Biological assembly 1 assigned by authors.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (CIT)
Biological assembly 2 assigned by authors.
Macromolecule Content
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Serotransferrin | 676 | Homo sapiens | Mutation(s): 11 Gene Names: TF | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P02787 (Homo sapiens) Explore P02787 Go to UniProtKB: P02787 | |||||
PHAROS: P02787 GTEx: ENSG00000091513 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02787 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CIT Query on CIT Download Ideal Coordinates CCD File
| C [auth A], E [auth B], F [auth B], G [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N | |||
GOL Query on GOL Download Ideal Coordinates CCD File | D [auth A], H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 87.996 | α = 90 |
b = 102.159 | β = 90 |
c = 197.044 | γ = 90 |
Software Name | Purpose |
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DENZO | data reduction |
SHARP | phasing |
CNS | refinement |
SCALEPACK | data scaling |
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.