- FASTA Sequence
- PDBx/mmCIF Format
- PDBx/mmCIF Format (gz)
- BinaryCIF Format (gz)
- Legacy PDB Format
- Legacy PDB Format (gz)
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- Structure Factors (CIF)
- Structure Factors (CIF - gz)
- Validation Full (PDF - gz)
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- Validation (CIF - gz)
- Validation 2fo-fc coefficients (CIF - gz)
- Validation fo-fc coefficients (CIF - gz)
- Biological Assembly 1 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
2FLR|pdb_00002flr
Novel 5-Azaindole Factor VIIa Inhibitors
- PDB DOI: https://doi.org/10.2210/pdb2FLR/pdb
- Classification: HYDROLASE/BLOOD CLOTTING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-01-06 Released: 2007-01-23
- Deposition Author(s): Riggs, J.R.,Hu, H.,Kolesnikov, A.,Tong, Z.,Leahy, E.M.,Wesson, K.E.,Shrader, W.D.,Vijaykumar, D.,Wahl, T.A.,Sprengeler, P.A.,Green, M.J.,Yu, C.,Katz, B.A.,Young, W.B.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.259 (Depositor), 0.220 (DCC)
- R-Value Work: 0.223 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.227 (Depositor)
This is version 1.4 of the entry. See complete history.
Literature
Download MendeleyNovel 5-azaindole factor VIIa inhibitors.
Riggs, J.R., Hu, H., Kolesnikov, A., Leahy, E.M., Wesson, K.E., Shrader, W.D., Vijaykumar, D., Wahl, T.A., Tong, Z., Sprengeler, P.A., Green, M.J., Yu, C., Katz, B.A., Sanford, E., Nguyen, M., Cabuslay, R., Young, W.B.(2006) Bioorg Med Chem Lett 16: 3197-3200
- PubMed: 16621549 Search on PubMed
- DOI: https://doi.org/10.1016/j.bmcl.2006.03.049
- Primary Citation of Related Structures:
2FLR - PubMed Abstract:
The discovery and development of 5-azaindole factor VIIa inhibitors will be described.
- Celera Genomics, 180 Kimball Way, South San Francisco, CA 94080, USA. jennifer.riggs@yahoo.com
Organizational Affiliation:
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (7NH)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Hetero 3-mer - A1B1C1
Find Similar Assemblies
Biological assembly 1 assigned by authors and generated by PISA (software)
Macromolecule Content
- Total Structure Weight: 70.25 kDa
- Atom Count: 4,325
- Modeled Residue Count: 501
- Deposited Residue Count: 624
- Unique protein chains: 3
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Coagulation factor VII | A [auth L] | 152 | Homo sapiens | Mutation(s): 0 Gene Names: F7 EC: 3.4.21.21 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08709 (Homo sapiens) Explore P08709 Go to UniProtKB: P08709 | |||||
PHAROS: P08709 GTEx: ENSG00000057593 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08709 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Coagulation factor VII | B [auth H] | 254 | Homo sapiens | Mutation(s): 0 Gene Names: F7 EC: 3.4.21.21 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08709 (Homo sapiens) Explore P08709 Go to UniProtKB: P08709 | |||||
PHAROS: P08709 GTEx: ENSG00000057593 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08709 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tissue factor | C [auth T] | 218 | Homo sapiens | Mutation(s): 0 Gene Names: F3 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P13726 (Homo sapiens) Explore P13726 Go to UniProtKB: P13726 | |||||
PHAROS: P13726 GTEx: ENSG00000117525 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13726 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 7NH Query on 7NH Download Ideal Coordinates CCD File | D [auth H] | [2'-HYDROXY-3'-(1H-PYRROLO[3,2-C]PYRIDIN-2-YL)-BIPHENYL-3-YLMETHYL]-UREA C21 H18 N4 O2 SRPOHNDQBDHONJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.259 (Depositor), 0.220 (DCC)
- R-Value Work: 0.223 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.227 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.31 | α = 90 |
| b = 68.64 | β = 91.15 |
| c = 77.89 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| X-PLOR | model building |
| X-PLOR | refinement |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 2007-01-23 Deposition Author(s): Riggs, J.R.,Hu, H.,Kolesnikov, A.,Tong, Z.,Leahy, E.M.,Wesson, K.E.,Shrader, W.D.,Vijaykumar, D.,Wahl, T.A.,Sprengeler, P.A.,Green, M.J.,Yu, C.,Katz, B.A.,Young, W.B.
Revision History (Full details and data files)
- Version 1.0: 2007-01-23
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
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