- FASTA Sequence
- PDBx/mmCIF Format
- PDBx/mmCIF Format (gz)
- BinaryCIF Format (gz)
- PDB Format
- PDB Format (gz)
- PDBML/XML Format (gz)
- Structure Factors (CIF)
- Structure Factors (CIF - gz)
- Validation Full PDF
- Validation (XML - gz)
- Validation (CIF - gz)
- Validation 2fo-fc coefficients (CIF - gz)
- Validation fo-fc coefficients (CIF - gz)
- Biological Assembly 1 (CIF - gz)
- Biological Assembly 2 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
- Biological Assembly 2 (PDB - gz)
2FIW|pdb_00002fiw
Crystal Structure of the GCN5-Related N-acetyltransferase: Aminotransferase, Class-II from Rhodopseudomonas palustris
- PDB DOI: https://doi.org/10.2210/pdb2FIW/pdb
- Classification: TRANSFERASE
- Organism(s): Rhodopseudomonas palustris CGA009
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2005-12-30 Released: 2006-02-14
- Deposition Author(s): Kim, Y.,Skarina, T.,Onopriyenko, O.,Savchenko, A.,Edwards, A.,Joachimiak, A.,Midwest Center for Structural Genomics (MCSG)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.263 (Depositor), 0.261 (DCC)
- R-Value Work: 0.219 (Depositor), 0.218 (DCC)
- R-Value Observed: 0.223 (Depositor)
This is version 1.4 of the entry. See complete history.
Literature
Download MendeleyCrystal Structure of the GCN5-Related N-acetyltransferase: Aminotransferase, Class-II from Rhodopseudomonas palustris
Kim, Y., Skarina, T., Onopriyenko, O., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ACO)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors and generated by PQS (software)
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (ACO)
Global Symmetry: Cyclic - C2 (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2
Find Similar Assemblies
Biological assembly 2 generated by PISA (software)
Macromolecule Content
- Total Structure Weight: 19.17 kDa
- Atom Count: 1,403
- Modelled Residue Count: 160
- Deposited Residue Count: 172
- Unique protein chains: 1
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GCN5-related N-acetyltransferase:Aminotransferase, class-II | 172 | Rhodopseudomonas palustris CGA009 | Mutation(s): 4 |  | |
UniProt | |||||
Find proteins for Q6N8A5 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6N8A5 Go to UniProtKB: Q6N8A5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6N8A5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACO Query on ACO Download Ideal Coordinates CCD File | C [auth A] | ACETYL COENZYME *A C23 H38 N7 O17 P3 S ZSLZBFCDCINBPY-ZSJPKINUSA-N |  | ||
| SO4 Query on SO4 Download Ideal Coordinates CCD File | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.263 (Depositor), 0.261 (DCC)
- R-Value Work: 0.219 (Depositor), 0.218 (DCC)
- R-Value Observed: 0.223 (Depositor)
Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.293 | α = 90 |
| b = 78.293 | β = 90 |
| c = 93.242 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| RESOLVE | phasing |
| SHELXE | model building |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2006-02-14 Deposition Author(s): Kim, Y.,Skarina, T.,Onopriyenko, O.,Savchenko, A.,Edwards, A.,Joachimiak, A.,Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-02-14
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2018-01-24
Changes: Database references - Version 1.4: 2024-12-25
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary
RCSB PDB is hosted by
RCSB PDB is a member of the
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.