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 1K7A|pdb_00001k7a

Ets-1(331-440)+GGAG duplex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.275 (Depositor), 0.270 (DCC) 
  • R-Value Work: 
    0.224 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.232 (Depositor) 

wwPDB Validation  3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural studies of Ets-1/Pax5 complex formation on DNA.

Garvie, C.W.Hagman, J.Wolberger, C.

(2001) Mol Cell 8: 1267-1276

  • PubMed11779502 Search on PubMed
  • DOI: https://doi.org/10.1016/s1097-2765(01)00410-5
  • Primary Citation of Related Structures:  
    1K78,1K79,1K7A

  • PubMed Abstract: 

    Pax5 regulates the B cell-specific expression of the mb-1 gene together with members of the Ets family of transcriptional activators. The Ets proteins on their own bind poorly to the Pax5/Ets binding site, but can be recruited to the site by cooperative interactions with Pax5. The structure of the ETS domain of Ets-1 and the paired domain of Pax5 bound to DNA reveals the molecular details of the selective recruitment of different Ets proteins by Pax5. Comparison with structures of Ets-1 alone bound to both high- and low-affinity DNA sites reveals that Pax5 alters the Ets-1 contacts with DNA. The ability of one protein to alter the DNA sequence-specific contacts of another provides a general mechanism for combinatorial regulation of transcription.


  • Organizational Affiliation
    • Department of Biophysics and Biophysical Chemistry, Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, 725 North Wolfe Street, Baltimore, MD 21205, USA.
Biological Assembly 1  

 Explore in 3DStructure |Sequence Annotations |Electron Density |Validation Report


Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 


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Biological assembly 1 assigned by authors.

Biological Assembly 2  

 Explore in 3DStructure |Sequence Annotations |Electron Density |Validation Report


Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 


Find Similar Assemblies

Biological assembly 2 assigned by authors.

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Macromolecule Content 

  • Total Structure Weight: 44.28 kDa 
  • Atom Count: 2,945 
  • Modeled Residue Count: 267 
  • Deposited Residue Count: 280 
  • Unique protein chains: 1
  • Unique nucleic acid chains: 2

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
C-ets-1 ProteinE [auth A],
F [auth D]
110Mus musculusMutation(s): 0 
Gene Names: Ets-1
UniProt
Find proteins for P27577 (Mus musculus)
Explore P27577 
Go to UniProtKB:  P27577
Entity Groups 
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP27577
Sequence Annotations
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  • Reference Sequence

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Entity ID: 1
MoleculeChains LengthOrganismImage
DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*GP*AP*TP*GP*T)-3')A [auth B],
C [auth E]
15N/A
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
DNA (5'-D(*CP*AP*CP*AP*TP*CP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3')B [auth C],
D [auth F]
15N/A
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.275 (Depositor), 0.270 (DCC) 
  • R-Value Work: 0.224 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.232 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 94.04α = 90
b = 75.27β = 118.28
c = 79.43γ = 90
Software Package:
Software NamePurpose
AMoREphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-01-04
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-07
    Changes: Data collection, Database references
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RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.


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