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- Structure Factors (CIF - gz)
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- Validation fo-fc coefficients (CIF - gz)
- Biological Assembly 1 (CIF - gz)
- Biological Assembly 2 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
- Biological Assembly 2 (PDB - gz)
1ZXC|pdb_00001zxc
Crystal structure of catalytic domain of TNF-alpha converting enzyme (TACE) with inhibitor
- PDB DOI: https://doi.org/10.2210/pdb1ZXC/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-06-07 Released: 2005-09-27
- Deposition Author(s): Levin, J.I.,Chen, J.M.,Laakso, L.M.,Du, M.,Schmid, J.,Xu, W.,Cummons, T.,Xu, J.,Zhang, Y.,Jin, G.,Cowling, R.,Barone, D.,Skotnicki, J.S.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.28 Å
- R-Value Free: 0.285 (Depositor), 0.280 (DCC)
- R-Value Work: 0.210 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.216 (Depositor)
Starting Model:experimental
View more details
Download MendeleyAcetylenic TACE inhibitors. Part 2: SAR of six-membered cyclic sulfonamide hydroxamates.
Levin, J.I., Chen, J.M., Laakso, L.M., Du, M., Du, X., Venkatesan, A.M., Sandanayaka, V., Zask, A., Xu, J., Xu, W., Zhang, Y., Skotnicki, J.S.(2005) Bioorg Med Chem Lett 15: 4345-4349
- PubMed: 16084720 Search on PubMed
- DOI: https://doi.org/10.1016/j.bmcl.2005.06.072
- Primary Citation of Related Structures:
1ZXC - PubMed Abstract:
The SAR of a series of potent sulfonamide hydroxamate TACE inhibitors bearing a butynyloxy P1' group was explored. In particular, compound 5k has excellent in vitro potency against TACE enzyme and in cells, and oral activity in an in vivo model of TNF-alpha production and a collagen-induced arthritis model.
- Wyeth Research, 401N. Middletown Road, Pearl River, NY 10965, USA. levinji@wyeth.com
Organizational Affiliation:
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (IH6)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report |Ligand Interaction (IH6)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 2 assigned by authors.
Macromolecule Content
- Total Structure Weight: 60.4 kDa
- Atom Count: 4,327
- Modeled Residue Count: 517
- Deposited Residue Count: 526
- Unique protein chains: 1
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ADAM 17 | 263 | Homo sapiens | Mutation(s): 2 Gene Names: ADAM17, CSVP, TACE EC: 3.4.24.86 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P78536 (Homo sapiens) Explore P78536 Go to UniProtKB: P78536 | |||||
PHAROS: P78536 GTEx: ENSG00000151694 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P78536 | ||||
Sequence AnnotationsExpand | |||||
| |||||
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IH6 Query on IH6 Download Ideal Coordinates CCD File | D [auth A], F [auth B] | (3S)-4-{[4-(BUT-2-YNYLOXY)PHENYL]SULFONYL}-N-HYDROXY-2,2-DIMETHYLTHIOMORPHOLINE-3-CARBOXAMIDE C17 H22 N2 O5 S2 CVZIHNYAZLXRRS-HNNXBMFYSA-N |  | ||
| ZN Query on ZN Download Ideal Coordinates CCD File | C [auth A], E [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.28 Å
- R-Value Free: 0.285 (Depositor), 0.280 (DCC)
- R-Value Work: 0.210 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.216 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.12 | α = 90 |
| b = 59.17 | β = 90 |
| c = 195.81 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Deposition Data
- Released Date: 2005-09-27 Deposition Author(s): Levin, J.I.,Chen, J.M.,Laakso, L.M.,Du, M.,Schmid, J.,Xu, W.,Cummons, T.,Xu, J.,Zhang, Y.,Jin, G.,Cowling, R.,Barone, D.,Skotnicki, J.S.
Revision History (Full details and data files)
- Version 1.0: 2005-09-27
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-10-20
Changes: Database references, Derived calculations - Version 1.4: 2023-08-23
Changes: Data collection, Refinement description - Version 1.5: 2024-11-20
Changes: Structure summary
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RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.