- FASTA Sequence
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- Structure Factors (CIF)
- Structure Factors (CIF - gz)
- Validation Full (PDF - gz)
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- Validation (CIF - gz)
- Validation 2fo-fc coefficients (CIF - gz)
- Validation fo-fc coefficients (CIF - gz)
- Biological Assembly 1 (CIF - gz)
- Biological Assembly 2 (CIF - gz)
- Biological Assembly 3 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
- Biological Assembly 2 (PDB - gz)
- Biological Assembly 3 (PDB - gz)
1Z9X|pdb_00001z9x
Human DRP-1 kinase, W305S S308A D40 mutant, crystal form with 3 monomers in the asymmetric unit
- PDB DOI: https://doi.org/10.2210/pdb1Z9X/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-04-05 Released: 2006-10-24
- Deposition Author(s): Kursula, P.,Lehmann, F.,Shani, G.,Kimchi, A.,Wilmanns, M.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.93 Å
- R-Value Free: 0.351 (Depositor), 0.360 (DCC)
- R-Value Work: 0.328 (Depositor), 0.330 (DCC)
- R-Value Observed: 0.330 (Depositor)
Starting Model:experimental
View more details
wwPDB Validation 3D Report Full Report
Download MendeleyA structural insight into the double-locking mechanism of the human death-associated DRP-1 kinase
Kursula, P., Lehmann, F., Shani, G., Kimchi, A., Wilmanns, M.To be published.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 2 assigned by authors.
Explore in 3D: Structure |Sequence Annotations |Electron Density |Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 3 assigned by authors.
Macromolecule Content
- Total Structure Weight: 111.15 kDa
- Atom Count: 7,407
- Modeled Residue Count: 909
- Deposited Residue Count: 963
- Unique protein chains: 1
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Death-associated protein kinase 2 | 321 | Homo sapiens | Mutation(s): 4 Gene Names: DAPK2 EC: 2.7.1.37 (PDB Primary Data), 2.7.11.1 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UIK4 (Homo sapiens) Explore Q9UIK4 Go to UniProtKB: Q9UIK4 | |||||
PHAROS: Q9UIK4 GTEx: ENSG00000035664 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UIK4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.93 Å
- R-Value Free: 0.351 (Depositor), 0.360 (DCC)
- R-Value Work: 0.328 (Depositor), 0.330 (DCC)
- R-Value Observed: 0.330 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 126.4 | α = 90 |
| b = 62.99 | β = 110.98 |
| c = 150.97 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345 | data collection |
| XDS | data scaling |
| AMoRE | phasing |
Deposition Data
- Released Date: 2006-10-24 Deposition Author(s): Kursula, P.,Lehmann, F.,Shani, G.,Kimchi, A.,Wilmanns, M.
Revision History (Full details and data files)
- Version 1.0: 2006-10-24
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2021-10-20
Changes: Data collection, Database references - Version 1.5: 2023-08-23
Changes: Data collection, Refinement description
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RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.