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(2002) Nature 418: 443-447
Tumour-necrosis factor (TNF) receptor-associated factor 6 (TRAF6) is the only TRAF family member that participates in signal transduction of both the TNF receptor (TNFR) superfamily and the interleukin-1 receptor (IL-1R)/Toll-like receptor (TLR) superfamily; it is important for adaptive immunity, innate immunity and bone homeostasis. Here we report crystal structures of TRAF6, alone and in complex with TRAF6-binding peptides from CD40 and TRANCE-R (also known as RANK), members of the TNFR superfamily, to gain insight into the mechanism by which TRAF6 mediates several signalling cascades. A 40 degrees difference in the directions of the bound peptides in TRAF6 and TRAF2 shows that there are marked structural differences between receptor recognition by TRAF6 and other TRAFs. The structural determinant of the petide TRAF6 interaction reveals a Pro-X-Glu-X-X-(aromatic/acidic residue) TRAF6-binding motif, which is present not only in CD40 and TRANCE-R but also in the three IRAK adapter kinases for IL-1R/TLR signalling. Cell-permeable peptides with the TRAF6-binding motif inhibit TRAF6 signalling, which indicates their potential as therapeutic modulators. Our studies identify a universal mechanism by which TRAF6 regulates several signalling cascades in adaptive immunity, innate immunity and bone homeostasis.
 Explore in 3D: Structure |Sequence Annotations |Validation Report
Biological assembly 1 assigned by authors and generated by PISA (software)
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TNF receptor-associated factor 6 | 160 | Homo sapiens | Mutation(s): 0  Gene Names: TRAF6 EC: 2.3.2.27 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y4K3 (Homo sapiens) Explore Q9Y4K3  Go to UniProtKB:  Q9Y4K3 | |||||
PHAROS:  Q9Y4K3 GTEx:  ENSG00000175104  | |||||
Entity Groups  | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y4K3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CD40 antigen | 9 | Homo sapiens | Mutation(s): 0  Gene Names: CD40 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25942 (Homo sapiens) Explore P25942  Go to UniProtKB:  P25942 | |||||
PHAROS:  P25942 GTEx:  ENSG00000101017  | |||||
Entity Groups  | |||||
| UniProt Group | P25942 | ||||
Sequence AnnotationsExpand | |||||
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| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.879 | α = 90 |
| b = 43.815 | β = 90 |
| c = 101.435 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
RCSB PDB Core Operations are funded by theU.S. National Science Foundation (DBI-2321666), theUS Department of Energy (DE-SC0019749), and theNational Cancer Institute,National Institute of Allergy and Infectious Diseases, andNational Institute of General Medical Sciences of theNational Institutes of Health under grant R01GM157729.