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The search result lists the genes found by the search function.
Theshow/hide columns function can be used to customize the columns in the search result list.
To refine the search results with specific criterias, use the "Fields". For more information and examples see theSearch help.
Data for all genes included in the search result can be downloaded in different formats, links are found in the upper right corner of the search result page: XML - An XML-file with more extensive data (including antigen sequences, protein expression, transcriptomics data, external references and more (seeXSD)) for up to 10000 genes. RDF - Structured nanopublication data for the tissue annotations TSV - Tab-separated file with a subset of the data available in the XML-file JSON - JSON formatted file with the same subset of the data available in the TSV-file Custom - Custom dataset defined by the user in TSV or JSON format. Useful if you only need some of the data columns available in the TSV/JSON format
1.Select data columns:i
Change the selections below to determine which columns to have in the final file. The ensembl gene id is always added to have a identifier present in the output.
A whole group can be selected/unselected as well as individual data columns by toggling the checkboxes.
This paragraph provides an overview of proteins elevated in brain from a whole body perspective and proteins elevated in regions of the brain from a whole brain perspective.
Protein evidence scores are generated from several independent sources and are classified as evidence at i) protein level, ii) transcript level, iii) no evidence, or iv) not available.
Antibodies used for immunohistochemistry (results presented in Tissue, Pathology and Brain Atlas) and immunocytochemistry/IF (results presented in Cell Atlas) assays. The assays are described in detail inAssays & annotation.
Reliability (IH)i
Reliability score, divided into Enhanced, Supported, Approved, or Uncertain, is evaluated in normal tissues and based on consistency between antibody staining pattern, available RNA-Seq and gene/protein characterization data, as well as similarity between independent antibodies targeting the same protein.
Reliability (Mouse Brain)i
Reliability score, divided into Supported or Uncertain, is set for all genes and indicates the level of reliability of the analyzed protein expression pattern based on available protein/RNA/gene characterization data.
Reliability (IF)i
Reliability score, divided into Enhanced, Supported, Approved, or Uncertain, is evaluated in cell lines and based on consistency between antibody staining pattern, available RNA-Seq and gene/protein characterization data, as well as similarity between independent antibodies targeting the same protein.
All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:
secreted into blood
locally secreted in a tissue or from a cell type
or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Cell Cycle Dependent Proteini
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Cell Cycle Dependent Transcripti
Cell cycle dependency of RNA expression in the FUCCI u-2 OS cell line, determined by RNA sequencing and monitoring of cell cycle stage in single cells. Genes encoding assayed transcripts are classified as CCD transcript "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Blood expression cluster
Tissue expression cluster
Brain expression cluster
Cell line expression cluster
Single cell expression cluster
Num protein interactions
Subcellular main location
Subcellular additional location
Antibody RRIDi
All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:
secreted into blood
locally secreted in a tissue or from a cell type
or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Breast Invasive Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Breast Invasive Carcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Colon Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Colon Adenocarcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Glioblastoma Multiforme (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Glioblastoma Multiforme (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Head and Neck Squamous Cell Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Kidney Chromophobe (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Kidney Renal Clear Cell Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Kidney Renal Clear Cell Carcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Kidney Renal Papillary Cell Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Liver Hepatocellular Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Liver Hepatocellular Carcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Lung Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Lung Adenocarcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Lung Squamous Cell Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Lung Squamous Cell Carcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Ovary Serous Cystadenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Ovary Serous Cystadenocarcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Pancreatic Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Pancreatic Adenocarcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Prostate Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Rectum Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Rectum Adenocarcinoma (validation)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Skin Cuteneous Melanoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Stomach Adenocarcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Testicular Germ Cell Tumor (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Thyroid Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Uterine Corpus Endometrial Carcinoma (TCGA)i
Cell cycle dependency of protein expression in the FUCCI U-2 OS cell line, determined by ICC-IF and monitoring of cell cycle stage in single cells. Genes encoding assayed proteins are classified as CCD protein "Yes" or "No", while a lack of classification indicates that data on cell cycle dependency is lacking.
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Bile duct cancer (7 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Bladder cancer (26 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Bone cancer (21 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Brain cancer (80 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Breast cancer (62 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Cervical cancer (8 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Colorectal cancer (63 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Esophageal cancer (27 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Gallbladder cancer (1 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Gastric cancer (42 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Head and neck cancer (38 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Kidney cancer (35 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Leukemia (93 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Liver cancer (24 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Lung cancer (232 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Lymphoma (76 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Myeloma (34 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Neuroblastoma (17 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Non-cancerous (63 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Ovarian cancer (59 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Pancreatic cancer (46 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Prostate cancer (8 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Rhabdoid (14 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Sarcoma (15 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Skin cancer (62 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Testis cancer (1 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Thyroid cancer (11 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Uncategorized (11 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
Uterine cancer (29 cell lines) [nTPM]i
Normalized gene expression ("nTPM") for each cell line in primary cancer group. All cell lines included are listedhere.
2.Select format to download:i
Selecting of format.
Clicking one of the Downlod boxes will download a file in the corresponding format with the selected data columns for the genes shown in the search result.
The copy boxes will give you a link to the file if you want to share it or save for later as a reference.
Protein evidence scores are generated from several independent sources and are classified as evidence at i) protein level, ii) transcript level, iii) no evidence, or iv) not available.
x
Tissuei
The Tissue resource contains information regarding the expression profile of human gene both on the mRNA and protein level. The protein expression data from 44 normal tissue types are derived from antibody-based profiling using immunohistchemistry. The green piechart indicates the level of reliability of the analyzed protein expression pattern based on available RNA-seq data, protein/gene characterization and immunohistochemical data from one or several antibodies with non-overlapping epitopes.
Braini
TheBrain resource describes gene expression in various regions of the human, mouse and pig brain, both on the mRNA and protein level.
Single celli
The Single Cell resource presents RNA expression profiles in single cell types based on single cell and deconvolution of bulk transcriptomics, including RNA seq of FACS sorted immune cells.
Subcelli
TheSubcellular resource contains high-resolution images showing the subcellular distribution of proteins and the RNA sequencing data of various tissue culture cell lines. The green piechart indicates the level of reliability of the detection protein localization based on available protein/gene characterization data and antibody validation level.
Canceri
The Cancer resource contains mRNA and protein expression data from 17 different forms of human cancer. Correlation analysis based on mRNA expression levels of human genes in cancer tissue and the clinical outcome for almost 8000 cancer patients is presented in a gene-centric manner. The green piechart indicates the level of reliability of the analyzed protein expression pattern based on available RNA-seq data, protein/gene characterization and immunohistochemical data from one or several antibodies with non-overlapping epitopes.
Bloodi
The Blood resource describes protein levels in blood in healthy persons and patients with different diseases. Estimated plasma concentrations of the proteins detected in human blood from mass spectrometry-based proteomics studies and published immune assay data as well as the protein levels in blood in healthy and disease cohorts based on proximity extension assay (PEA) are presented.
Cell linei
TheCell line resource contains information regarding mRNA expression profiles of human protein-coding genes for a large variety of cell lines.
Struct & Inti
The Structure & Interaction resource contains predicted 3D structures as well as protein-protein interaction and metabolic networks. Predicted 3D structures for most proteins and their related isoforms, interaction networks based on data from different databases, and pathways for metabolic proteins are presented with options to highlight features such as antigen sequences and known and predicted missense variants in the structures as well as the location and expression of the interactors in the networks.
The Human Protein Atlas project is funded
