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HIPPOCAMPAL FORMATION - Expression summary

Protein expression
Hippocampusⁱ

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Glial cells:	Not detected
Neuronal cells:	Not detected

RNA expressionⁱ

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by theFANTOM5 consortium.Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse,HPA data and in situ hybridization generated by theAllen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:	0.0	nTPM
HPA Brain:	0.3	nTPM
GTEx:	0.0	nTPM
FANTOM5:	0.0	Scaled Tags Per Million

Pig:	0.3	nTPM
Mouse:	0.0	nTPM
Allen mouse:	0.0	Expression energy

HIPPOCAMPUS -Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

	Antibody HPA042681	Antibody CAB022202	Antibody CAB080112
Glial cells	Not detected	Not detected	Not detected
Neuronal cells	Not detected	Not detected	Not detected

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	0.3

Sample id

Sample description

nTPM

Hippocampus
nTPM: 0.1

1898	Male, age 80, left hemisphere	0.3
2148	Female, age 91, left hemisphere	0.2
2621	Female, age 67, right hemisphere	0.2
2529	Female, age 94, left hemisphere	0.1
1855	Male, age 76, left hemisphere	0.0
1911	Female, age 85, right hemisphere	0.0

Dentate gyrus
nTPM: 0.1

2528	Male, age 74, both hemispheres	0.5
2530	Female, age 94, left hemisphere	0.2
1927	Female, age 91, both hemispheres	0.1
2010	Male, age 76, both hemispheres	0.0
2246	Female, age 85, both hemispheres	0.0
2531	Female, age 67, both hemispheres	0.0

Entorhinal gyrus
nTPM: 0.3

1787	Male, age 76, left hemisphere	0.6
2686	Male, age 75, right hemisphere	0.4
1938	Female, age 85, left hemisphere	0.2
2764	Male, age 80, right hemisphere	0.2
2117	Female, age 91, right hemisphere	0.1
2613	Female, age 94, left hemisphere	0.1

Hippocampus, CA1
nTPM: 0.1

2749	Male, age 80, left hemisphere	0.3
2527	Male, age 74, both hemispheres	0.2
2045	Male, age 76, both hemispheres	0.1
1873	Female, age 85, both hemispheres	0.0
2082	Female, age 91, right hemisphere	0.0

Hippocampus, CA2
nTPM: 0.1

2249	Male, age 74, both hemispheres	0.5
1963	Male, age 80, left hemisphere	0.2
2437	Female, age 94, left hemisphere	0.1
1892	Male, age 76, both hemispheres	0.0
1940	Female, age 85, left hemisphere	0.0
2113	Female, age 91, right hemisphere	0.0

Hippocampus, CA3
nTPM: 0.1

2436	Male, age 74, both hemispheres	0.3
2620	Female, age 94, left hemisphere	0.2
2861	Female, age 67, both hemispheres	0.2
1867	Male, age 76, both hemispheres	0.1
2137	Male, age 80, left hemisphere	0.1
1891	Female, age 85, both hemispheres	0.0

Parahippocampal cortex
nTPM: 0.1

1850	Male, age 80, both hemispheres	0.2
2692	Male, age 74, both hemispheres	0.2
1933	Female, age 85, both hemispheres	0.1
1990	Female, age 91, right hemisphere	0.1
2693	Female, age 94, both hemispheres	0.1
2018	Male, age 76, both hemispheres	0.0
2245	Female, age 91, both hemispheres	0.0
2250	Female, age 67, right hemisphere	0.0
2532	Female, age 72, left hemisphere	0.0
2622	Female, age 67, right hemisphere	0.0

Perirhinal gyrus
nTPM: 0.2

1847	Female, age 91, left hemisphere	0.5
2521	Female, age 94, right hemisphere	0.4
1794	Male, age 80, right hemisphere	0.1
1841	Female, age 85, right hemisphere	0.1
2848	Male, age 76, right hemisphere	0.1

Subiculum
nTPM: 0.2

2438	Female, age 94, left hemisphere	0.9
2619	Male, age 74, both hemispheres	0.2
1901	Male, age 80, both hemispheres	0.1
1977	Female, age 85, both hemispheres	0.1
2042	Male, age 76, both hemispheres	0.0
2729	Female, age 91, right hemisphere	0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqⁱ

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on theGTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	0.0

GTEx sample id

Sample description

nTPM

Brain - Hippocampus
Average nTPM: 0.0

Samples:197

Max nTPM:10.8
Min nTPM:0.0
Std nTPM:0.7
Median nTPM:0.0

GTEX-RNOR-0011-R1A-SM-CNNP5	50-59 years, female	10.8
GTEX-ZVZQ-0011-R1a-SM-57WBU	60-69 years, female	1.6
GTEX-1C6VR-0011-R1a-SM-7MXUE	60-69 years, male	1.2
GTEX-13OW7-0011-R1b-SM-5L3HF	50-59 years, male	1.1
GTEX-13OW6-0011-R1a-SM-5L3HQ	50-59 years, male	0.8
GTEX-18A6Q-0011-R1b-SM-731DI	60-69 years, male	0.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D	60-69 years, male	0.8
GTEX-X4XX-0011-R1B-SM-3P622	60-69 years, male	0.4
GTEX-12WSD-0011-R1b-SM-5LZVY	60-69 years, female	0.3
GTEX-T6MN-0011-R1A-SM-32QOY	50-59 years, male	0.3
GTEX-12WSH-0011-R1a-SM-5GU5V	50-59 years, male	0.1
GTEX-139TT-0011-R1a-SM-5LZVD	60-69 years, male	0.1
GTEX-13O3Q-0011-R1b-SM-5KM3L	50-59 years, male	0.1
GTEX-11GSO-0011-R1b-SM-57WD3	60-69 years, male	0.0
GTEX-11ONC-0011-R1a-SM-57WD4	60-69 years, male	0.0
GTEX-11UD1-0011-R1b-SM-5BC7D	40-49 years, female	0.0
GTEX-11ZTS-0011-R1a-SM-5BC71	60-69 years, female	0.0
GTEX-11ZVC-0011-R1b-SM-5BC6M	50-59 years, female	0.0
GTEX-1212Z-0011-R1b-SM-5BC72	60-69 years, male	0.0
GTEX-12WSE-0011-R1b-SM-5GU4V	20-29 years, male	0.0
GTEX-12WSF-0011-R1a-SM-5DUVI	70-79 years, male	0.0
GTEX-12WSM-0011-R1a-SM-5LZW6	60-69 years, male	0.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B	40-49 years, female	0.0
GTEX-13112-0011-R1b-SM-5HL7K	50-59 years, male	0.0
GTEX-1313W-0011-R1b-SM-5EQ4A	50-59 years, female	0.0
GTEX-131XH-0011-R1a-SM-5DUWA	50-59 years, male	0.0
GTEX-131YS-0011-R1a-SM-5DUXC	60-69 years, female	0.0
GTEX-132Q8-0011-R1a-SM-5EGLK	60-69 years, male	0.0
GTEX-1399T-0011-R1b-SM-5DUWN	60-69 years, male	0.0
GTEX-139T8-0011-R1a-SM-5HL75	60-69 years, male	0.0
GTEX-13CF2-0011-R1a-SM-5LZY1	60-69 years, male	0.0
GTEX-13FHO-0011-R1b-SM-5KLZG	60-69 years, male	0.0
GTEX-13FHP-0011-R1b-SM-5K7XL	50-59 years, male	0.0
GTEX-13FLW-0011-R1b-SM-5LZX2	50-59 years, male	0.0
GTEX-13FTY-0011-R1a-SM-5LZXE	40-49 years, female	0.0
GTEX-13FXS-0011-R1a-SM-5K7U6	50-59 years, male	0.0
GTEX-13G51-0011-R1a-SM-5LZYR	60-69 years, male	0.0
GTEX-13JUV-0011-R1a-SM-5LZY4	40-49 years, female	0.0
GTEX-13JVG-0011-R1a-SM-5KM32	60-69 years, male	0.0
GTEX-13N1W-0011-R1b-SM-5MR4T	70-79 years, male	0.0
GTEX-13N2G-0011-R1b-SM-5MR3G	60-69 years, male	0.0
GTEX-13NYB-0011-R1b-SM-5KM4F	40-49 years, male	0.0
GTEX-13NYS-0011-R1b-SM-5MR55	60-69 years, male	0.0
GTEX-13NZ8-0011-R1b-SM-5KM3V	60-69 years, female	0.0
GTEX-13NZA-0011-R1b-SM-5LUAF	60-69 years, male	0.0
GTEX-13O3O-0011-R1b-SM-5KM2K	60-69 years, female	0.0
GTEX-13OVJ-0011-R1b-SM-5L3I6	50-59 years, female	0.0
GTEX-13OVL-0011-R1a-SM-5L3H5	50-59 years, male	0.0
GTEX-13OW5-0011-R1b-SM-5L3GE	60-69 years, male	0.0
GTEX-13OW8-0011-R1a-SM-5L3HI	60-69 years, male	0.0
GTEX-13PDP-0011-R1a-SM-5PNX5	60-69 years, male	0.0
GTEX-13QIC-0011-R1a-SM-5O9CJ	60-69 years, female	0.0
GTEX-13QJC-0011-R1b-SM-5S2UU	60-69 years, female	0.0
GTEX-13RTJ-0011-R1a-SM-5O9D9	60-69 years, male	0.0
GTEX-13RTL-0011-R1a-SM-5PNZ8	40-49 years, male	0.0
GTEX-13S7M-0011-R1b-SM-5PNZE	60-69 years, female	0.0
GTEX-13SLW-0011-R1a-SM-5S2W7	70-79 years, male	0.0
GTEX-13X6I-0011-R1b-SM-5PNZC	60-69 years, male	0.0
GTEX-144GL-0011-R1a-SM-5PNZ5	50-59 years, male	0.0
GTEX-144GO-0011-R1a-SM-5PNWO	60-69 years, male	0.0
GTEX-145LS-0011-R1b-SM-5PNUP	60-69 years, female	0.0
GTEX-145LU-0011-R1a-SM-5Q5CE	50-59 years, male	0.0
GTEX-145MH-0011-R1b-SM-5PNWY	50-59 years, male	0.0
GTEX-14ABY-0011-R1a-SM-6EU2W	50-59 years, male	0.0
GTEX-14ASI-0011-R1b-SM-5S2TY	60-69 years, male	0.0
GTEX-14BIM-0011-R1a-SM-69LQI	60-69 years, female	0.0
GTEX-14C5O-0011-R1b-SM-6AJBW	60-69 years, male	0.0
GTEX-14E6D-0011-R1b-SM-5YYAW	50-59 years, male	0.0
GTEX-14E7W-0011-R1b-SM-5YYAT	70-79 years, male	0.0
GTEX-14JIY-0011-R1a-SM-68713	60-69 years, male	0.0
GTEX-14LLW-0011-R1a-SM-5ZZVD	70-79 years, female	0.0
GTEX-14LZ3-0011-R1a-SM-69LP5	60-69 years, female	0.0
GTEX-14PJO-0011-R1b-SM-6AJAK	60-69 years, male	0.0
GTEX-14PN4-0011-R1b-SM-69LP8	50-59 years, male	0.0
GTEX-14PQA-0011-R1b-SM-6EU1G	50-59 years, female	0.0
GTEX-15DCD-0011-R1b-SM-6LPIJ	70-79 years, female	0.0
GTEX-15ER7-0011-R1b-SM-7KUE1	20-29 years, female	0.0
GTEX-16GPK-0011-R1b-SM-7EWDH	60-69 years, male	0.0
GTEX-16XZZ-0011-R1a-SM-7LTAH	60-69 years, male	0.0
GTEX-16YQH-0011-R1a-SM-7LT8R	30-39 years, male	0.0
GTEX-16Z82-0011-R1b-SM-7EPHZ	60-69 years, male	0.0
GTEX-17EVP-0011-R1a-SM-7DHLA	40-49 years, male	0.0
GTEX-17EVQ-0011-R1a-SM-7189S	70-79 years, male	0.0
GTEX-17F97-0011-R1b-SM-7IGM9	50-59 years, male	0.0
GTEX-17HG3-0011-R1a-SM-7LG6H	30-39 years, female	0.0
GTEX-17HHY-0011-R1a-SM-7189V	50-59 years, male	0.0
GTEX-17JCI-0011-R1b-SM-718A3	60-69 years, female	0.0
GTEX-17MF6-0011-R1a-SM-72D6O	40-49 years, male	0.0
GTEX-183WM-0011-R1a-SM-718A8	70-79 years, female	0.0
GTEX-N7MS-0011-R1a-SM-2HMJG	60-69 years, male	0.0
GTEX-NL3H-0011-R1a-SM-48TDJ	60-69 years, male	0.0
GTEX-NPJ7-0011-R1a-SM-3GACT	60-69 years, female	0.0
GTEX-NPJ8-0011-R1a-SM-33HCB	40-49 years, male	0.0
GTEX-OHPN-0011-R1A-SM-2I5GB	60-69 years, female	0.0
GTEX-P44G-0011-R1A-SM-2I3FE	30-39 years, male	0.0
GTEX-P44H-0011-R1A-SM-3NM8J	40-49 years, male	0.0
GTEX-PVOW-0011-R1A-SM-32PL6	40-49 years, male	0.0
GTEX-PWO3-0011-R1A-SM-2I5EW	60-69 years, female	0.0
GTEX-Q2AG-0011-R1A-SM-2HMJI	40-49 years, female	0.0
GTEX-QDT8-0011-R1A-SM-32PKS	30-39 years, female	0.0
GTEX-QMR6-0011-R1A-SM-32PKW	50-59 years, male	0.0
GTEX-QVJO-0011-R1A-SM-2S1QI	60-69 years, female	0.0
GTEX-QVUS-0011-R1A-SM-3GAD2	60-69 years, female	0.0
GTEX-R55E-0011-R1A-SM-2TC6N	20-29 years, male	0.0
GTEX-S7SE-0011-R1A-SM-2XCDE	50-59 years, male	0.0
GTEX-T5JC-0011-R1A-SM-32PM6	20-29 years, male	0.0
GTEX-TSE9-0011-R1A-SM-3DB7E	60-69 years, female	0.0
GTEX-UTHO-0011-R1A-SM-3GIJO	60-69 years, male	0.0
GTEX-WHSE-0011-R1A-SM-3P5ZK	20-29 years, male	0.0
GTEX-WL46-0011-R1A-SM-3LK6M	50-59 years, male	0.0
GTEX-WVLH-0011-R1A-SM-4MVOK	50-59 years, male	0.0
GTEX-WWYW-0011-R1A-SM-3TW8G	50-59 years, female	0.0
GTEX-WZTO-0011-R1B-SM-3NMAR	40-49 years, male	0.0
GTEX-X4EP-0011-R1A-SM-3P624	60-69 years, female	0.0
GTEX-X585-0011-R1B-SM-46MVE	50-59 years, male	0.0
GTEX-XMD1-0011-R1A-SM-4AT4C	60-69 years, male	0.0
GTEX-Y8DK-0011-R1A-SM-4RGLO	60-69 years, male	0.0
GTEX-YFC4-0011-R1a-SM-4V6EH	40-49 years, female	0.0
GTEX-YJ89-0011-R1a-SM-4RGLS	60-69 years, male	0.0
GTEX-ZAB4-0011-R1a-SM-4RGNO	40-49 years, male	0.0
GTEX-ZDXO-0011-R1a-SM-4WKF4	60-69 years, male	0.0
GTEX-ZE7O-0011-R1a-SM-57WDM	50-59 years, female	0.0
GTEX-ZF28-0011-R1a-SM-4WWD1	60-69 years, male	0.0
GTEX-ZUA1-0011-R1a-SM-4YCE2	40-49 years, male	0.0
GTEX-11DXW-0011-R1a-SM-DNZZD	40-49 years, male	0.0
GTEX-11EI6-0011-R1a-SM-DO93L	60-69 years, male	0.0
GTEX-11GS4-0011-R1a-SM-DO129	60-69 years, male	0.0
GTEX-11GSP-0011-R1a-SM-9QEJ3	60-69 years, female	0.0
GTEX-11TUW-0011-R1a-SM-DO92S	60-69 years, male	0.0
GTEX-11WQC-0011-R1b-SM-DO932	60-69 years, male	0.0
GTEX-14PJM-0011-R1a-SM-CNPO3	50-59 years, female	0.0
GTEX-15CHQ-0011-R1a-SM-COH27	60-69 years, male	0.0
GTEX-15UF6-0011-R1a-SM-9QEGH	70-79 years, female	0.0
GTEX-16NPV-0011-R1b-SM-7MGVZ	50-59 years, female	0.0
GTEX-17HII-0011-R1b-SM-7MGVW	50-59 years, male	0.0
GTEX-1A32A-0011-R1a-SM-7P8SQ	50-59 years, female	0.0
GTEX-1A3MX-0011-R1b-SM-7P8PH	60-69 years, male	0.0
GTEX-1A8G6-0011-R1a-SM-7P8PC	60-69 years, male	0.0
GTEX-1AX9I-0011-R1b-SM-7RHG2	60-69 years, male	0.0
GTEX-1B8L1-0011-R1a-SM-7P8SS	60-69 years, male	0.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8	60-69 years, male	0.0
GTEX-1B933-0011-R1b-SM-9QEGW	50-59 years, female	0.0
GTEX-1B996-0011-R1b-SM-7P8PO	60-69 years, male	0.0
GTEX-1BAJH-0011-R1a-SM-7P8SV	70-79 years, male	0.0
GTEX-1C64N-0011-R1b-SM-7P8Q7	50-59 years, male	0.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2	50-59 years, male	0.0
GTEX-1CAV2-0011-R1a-SM-ARZML	40-49 years, female	0.0
GTEX-1CB4G-0011-R1b-SM-9QEHT	60-69 years, male	0.0
GTEX-1CB4J-0011-R1a-SM-9WG64	60-69 years, male	0.0
GTEX-1E1VI-0011-R1a-SM-ARZMM	50-59 years, male	0.0
GTEX-1E2YA-0011-R1b-SM-CJI29	50-59 years, male	0.0
GTEX-1EH9U-0011-R1b-SM-CJI2B	60-69 years, male	0.0
GTEX-1EKGG-0011-R1b-SM-9QEI1	60-69 years, male	0.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ	60-69 years, male	0.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7	70-79 years, female	0.0
GTEX-1EX96-0011-R1a-SM-CE6R5	50-59 years, male	0.0
GTEX-1F48J-0011-R1a-SM-9QEIC	50-59 years, female	0.0
GTEX-1F6I4-0011-R1a-SM-9OSWU	60-69 years, male	0.0
GTEX-1F6IF-0011-R1b-SM-9WG78	60-69 years, male	0.0
GTEX-1F75A-0011-R1b-SM-CE6RA	50-59 years, male	0.0
GTEX-1F75W-0011-R1a-SM-ARU81	60-69 years, male	0.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ	60-69 years, male	0.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ	60-69 years, male	0.0
GTEX-1GMR8-0011-R1b-SM-CJI2O	50-59 years, female	0.0
GTEX-1GN1U-0011-R1a-SM-CJI25	50-59 years, female	0.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ	60-69 years, male	0.0
GTEX-1GN73-0011-R1a-SM-CKZNT	60-69 years, male	0.0
GTEX-1GTWX-0011-R1a-SM-CE6RL	60-69 years, male	0.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y	40-49 years, male	0.0
GTEX-1GZHY-0011-R1a-SM-CE6RR	50-59 years, female	0.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ	60-69 years, female	0.0
GTEX-1H1DG-0011-R1b-SM-CKZP1	70-79 years, male	0.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E	70-79 years, male	0.0
GTEX-1H23P-0011-R1a-SM-ACKVC	60-69 years, male	0.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5	60-69 years, male	0.0
GTEX-1H3O1-0011-R1b-SM-CL554	60-69 years, male	0.0
GTEX-1H3VE-0011-R1a-SM-A9G1K	40-49 years, male	0.0
GTEX-1H4P4-0011-R1b-SM-CL54V	50-59 years, male	0.0
GTEX-1HBPI-0011-R1b-SM-A9SKF	50-59 years, male	0.0
GTEX-1HGF4-0011-R1a-SM-CJI3S	60-69 years, male	0.0
GTEX-1HR98-0011-R1a-SM-ARZLQ	60-69 years, male	0.0
GTEX-1HSKV-0011-R1b-SM-CMKH7	60-69 years, male	0.0
GTEX-1HSMO-0011-R1a-SM-CM2SV	60-69 years, male	0.0
GTEX-1HT8W-0011-R1b-SM-CJI3V	30-39 years, male	0.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG	50-59 years, male	0.0
GTEX-1I1GS-0011-R1a-SM-CJI43	60-69 years, male	0.0
GTEX-1I1GV-0011-R1a-SM-CL559	60-69 years, male	0.0
GTEX-1I1HK-0011-R1b-SM-CM2T7	60-69 years, male	0.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3	60-69 years, male	0.0
GTEX-1IDJH-0011-R1b-SM-ARU6U	70-79 years, male	0.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ	60-69 years, male	0.0
GTEX-1IOXB-0011-R1a-SM-D4P27	50-59 years, male	0.0
GTEX-1IY9M-0011-R1a-SM-EXURZ	60-69 years, male	0.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z	40-49 years, female	0.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV	50-59 years, male	0.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV	50-59 years, male	0.0
GTEX-N7MT-0011-R1a-SM-CNPO1	60-69 years, female	0.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEⁱ

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by theFANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millionⁱ Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.	0

FANTOM5 sample id

Sample description

Scaled Tags Per Million

Hippocampus
Scaled Tags Per Million: 0.0

FF:10169-103B7	60 years, female	0.0
FF:10153-102I9	76 years, female	0.0

HIPPOCAMPAL FORMATION - Pig RNA-seqⁱ

RNA-seq data obtained from pig brain is reported asnTPM.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	0.3

Pig sample

Sample description

nTPM

Subiculum
nTPM: 0.2

Samples:4

Max nTPM:0.5
Min nTPM:0.0

Sample A	Female	0.3
Sample B	Female	0.0
Sample C	Male	0.5
Sample D	Male	0.1

Dorsal hippocampus
nTPM: 0.4

Samples:4

Max nTPM:0.7
Min nTPM:0.1

Sample A	Female	0.1
Sample B	Female	0.3
Sample C	Male	0.7
Sample D	Male	0.3

Entorhinal cortex
nTPM: 0.4

Samples:4

Max nTPM:0.5
Min nTPM:0.2

Sample A	Female	0.4
Sample B	Female	0.3
Sample C	Male	0.5
Sample D	Male	0.2

Ventral hippocampus
nTPM: 0.3

Samples:4

Max nTPM:0.4
Min nTPM:0.0

Sample A	Female	0.4
Sample B	Female	0.3
Sample C	Male	0.0
Sample D	Male	0.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqⁱ

RNA-seq data obtained from mouse brain is reported asnTPM.

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	0.0

Mouse sample

Sample description

nTPM

Entorhinal cortex
nTPM: 0.0

Samples:4

Max nTPM:0.0
Min nTPM:0.0

Sample A	Male	0.0
Sample B	Male	0.0
Sample C	Female	0.0
Sample D	Female	0.0

Hippocampal formation
nTPM: 0.0

Samples:4

Max nTPM:0.0
Min nTPM:0.0

Sample A	Male	0.0
Sample B	Male	0.0
Sample C	Female	0.0
Sample D	Female	0.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHⁱ

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyⁱ Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.	0.0

Allen experiment id

Experiment description

Expression energy

Hippocampal formation
Expression energy: 0.0

100144122

Antisense, RP_110407_02_H09, Mouse strain C57BL/6J (56 days, male)

0.0