Focus
Coping with COVID
In the year plus since the first cases of COVID-19 were announced, the SARS-CoV-2 virus has spread globally, causing a significant halt to normal life for much of the world.Nature Immunology presents the Series “Coping with COVID,” in which commissioned articles from authors across the globe describe how COVID-19 has impacted their countries and the ensuing responses to this public health crisis. Throughout the coming year, additional content will be included in this collection. Also included will be archival primary research published byNature Immunology on immune responses to SARS-CoV-2 infection.

Editorial
World View & Comment
From denial to hope: Brazil deals with a prolonged COVID-19 epidemic course
Brazil must strengthen science-based education to improve human development and responses to future public health threats.
- Marcela F. Lopes
World ViewNature ImmunologyIndia’s crusade against COVID-19
The COVID-19 response in India has been rapid, strategic and multipronged and has adapted to the evolving pandemic situation.
- Manisha Madkaikar
- Nivedita Gupta
- Umair Ahmed Bargir
World ViewNature ImmunologyLiving the SARS-CoV-2 pandemic in Turkey
To cope with the new situation during the pandemic, the Turkish people have united in the fight against SARS-CoV-2 with their healthcare workers, scientists and government. We are waiting for the global pandemic to end soon.
- Deniz Çağdaş
World ViewNature ImmunologyCOVID-19 control in Vietnam
Early preparedness, contact tracing, isolation and testing, coupled with timely border closure, physical distancing and community adherence, have been key measures in controlling COVID-19 in Vietnam.
- Le Van Tan
World ViewNature ImmunologyNew Zealand’s science-led response to the SARS-CoV-2 pandemic
New Zealand has avoided the major health impacts of the SARS-CoV-2 pandemic due to a strict country-wide lockdown, the end-goal of which was elimination rather than mitigation and suppression. The New Zealand government’s use of scientific expertise, spanning public health, infectious diseases, genomics, modeling and immunology, has been one of the keys to the success of its SARS-CoV-2 elimination and control strategy.
- Jemma L. Geoghegan
- Nicole J. Moreland
- James E. Ussher
CommentNature ImmunologyFacing up to the COVID-19 pandemic in Argentina
From the onset of the SARS-CoV-2 pandemic and following the creation of the ‘Coronavirus Unit’, Argentinean scientists and technologists have contributed by leading basic and translational research initiatives, including developing diagnostic and serological kits, designing new therapeutic approaches, establishing epidemiological platforms, executing clinical trials and implementing social measures to protect the most vulnerable groups of the population.
- Gabriel A. Rabinovich
- Jorge Geffner
CommentNature ImmunologyTaiwan’s experience in fighting COVID-19
Taiwan has leveraged its experience in containing the 2003 SARS outbreak by responding to the COVID-19 crisis with rapid measures, early deployment, prudent actions and transparency. Collectively, these actions have created the ‘Taiwan model’ for combating COVID-19.
- Shih-Chung Chen
World ViewNature ImmunologyLessons learned: new insights on the role of cytokines in COVID-19
In the midst of resurging COVID-19 cases, the second NIH/FDA virtual COVID-19 and Cytokines symposium was held on 1 December 2020, focusing on longitudinal studies of COVID-19 immunity, including long-term consequences, potential associations with autoimmunity and the multisystem inflammatory syndrome in children (MIS-C).
- Maja Buszko
- Aleksandra Nita-Lazar
- Amy S. Rosenberg
Meeting ReportNature ImmunologyThe accelerating COVID-19 epidemic in Sudan
Mukhtar and Khogali discuss the many challenges Sudan has faced in coping with the COVID-19 pandemic.
- Maowia M. Mukhtar
- Mustafa Khogali
World ViewNature ImmunologyCOVID-19 research and science in the service of public health: the example of Greece
The COVID-19 response in Greece has been swift and flexible, adapting to the evolving pandemic and creating unique opportunities for research.
- Sotirios Tsiodras
World ViewNature ImmunologyThe COVID-19 response in the United Arab Emirates: challenges and opportunities
Like other countries in the region, the United Arab Emirates (UAE) was deeply affected by the pandemic. However, its foresight and proactive policies helped to create opportunities out of the challenges and spurred the development of trilateral collaborations involving government, academia and industry.
- Ahmed R. Alsuwaidi
- Farida I. Al Hosani
- Basel K. al-Ramadi
World ViewNature ImmunologyThe embers underneath the CoV-2 pandemic: a semblance of the persistent burn of health inequities and disparities in the United States
Could we have predicted that the second deadliest pandemic encountered since the influenza pandemic of 1918 would result in the highest mortality and adverse health outcomes among minority and underserved populations in the United States? Given the abundant evidence documenting the disproportionately high burden of preventable disease, disability, and injury among these underserved groups, our answer should echo a resounding ‘yes’.
- Harlan P. Jones
- Nicole R. Phillips
World ViewNature Immunology
From the archive
Robust SARS-CoV-2-specific T cell immunity is maintained at 6 months following primary infection
The contribution of T cells to the SARS-CoV-2 response remains an important and unresolved question. Moss and colleagues examine T cell and antibody kinetics in a large cohort of patients with COVID-19 and find robust and durable T cell responses.
- Jianmin Zuo
- Alexander C. Dowell
- Paul Moss
ArticleNature ImmunologyOutcome of SARS-CoV-2 infection is linked to MAIT cell activation and cytotoxicity
Severe COVID-19 is characterized by hyperinflammation, and there is a need for accurate predictive biomarkers of progression. Lehuen et al. demonstrate that patients with severe COVID-19 show a dramatic loss of MAIT cells, and those that do remain are in a highly activated state.
- Héloïse Flament
- Matthieu Rouland
- Agnès Lehuen
ArticleNature ImmunologyUntuned antiviral immunity in COVID-19 revealed by temporal type I/III interferon patterns and flu comparison
Andreakos and colleagues provide a longitudinal study comparing patients with COVID-19 to patients infected with influenza. They report a dysregulated interferon response whereby IFN-λ and type I IFN production were diminished and delayed in patients with COVID-19, exhibiting a response that is ‘untuned’ with other inflammatory cytokines.
- Ioanna-Evdokia Galani
- Nikoletta Rovina
- Evangelos Andreakos
LetterNature ImmunologyEstablishment of an African green monkey model for COVID-19 and protection against re-infection
Geisbert and colleagues report that African green monkeys infected with the SARS-CoV-2 virus develop disease symptoms that closely resemble those seen in infected humans, making this animal model a useful surrogate to investigate immune responses to coronavirus infection.
- Courtney Woolsey
- Viktoriya Borisevich
- Robert W. Cross
ArticleNature ImmunologyMacrophage expression and prognostic significance of the long pentraxin PTX3 in COVID-19
Mantovani and colleagues report elevated circulating concentrations of the long pentraxin PTX3 in patients with severe COVID-19. Within this cohort, early detection of high PTX3 concentrations emerged as a strong predictor of decreased survival.
- Enrico Brunetta
- Marco Folci
- Alberto Mantovani
LetterNature ImmunologyProinflammatory IgG Fc structures in patients with severe COVID-19
COVID-19 is often characterized by a hyperinflammatory syndrome. Wang and colleagues show that low levels of IgG fucosylation enhance interactions with activating Fcγ receptors, boosting the inflammatory cytokines associated with severe COVID-19.
- Saborni Chakraborty
- Joseph Gonzalez
- Taia T. Wang
ArticleNature ImmunologyDistinct antibody responses to SARS-CoV-2 in children and adults across the COVID-19 clinical spectrum
Farber and colleagues report distinct antibody responses to SARS-CoV-2 in pediatric cohorts, including those who developed multisystem inflammatory syndrome (MIS-C), and adult COVID-19 cohorts.
- Stuart P. Weisberg
- Thomas J. Connors
- Donna L. Farber
LetterNature ImmunologyExtrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19
Sanz and colleagues examine B cell subsets in a cohort of patients with COVID-19. Severely ill patients have higher frequencies of activated extrafollicular T-bet+ B cells that form antibody-secreting cells, the majority of which express germline sequences and are reminiscent of antibody responses observed in patients with systemic lupus erythematosus during flares.
- Matthew C. Woodruff
- Richard P. Ramonell
- Ignacio Sanz
ArticleNature ImmunologySARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition
SARS-CoV-2-specific CD4+ and CD8+ T cell epitopes are found in both convalescent patients and virus-naive volunteers and are indicative of heterologous recognition shared with seasonal cold viruses.
- Annika Nelde
- Tatjana Bilich
- Juliane S. Walz
ArticleNature ImmunologyBroad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19
Questions have arisen as to whether patients with severe COVID-19 disease can generate a T cell response against SARS-CoV-2. Tao Dong and colleagues report that convalescent patients with COVID-19 harbor functional memory CD4+ and CD8+ T cells that recognize multiple epitopes that span the viral proteome. CD4+ T cells predominated the memory response in patients with severe disease, whereas higher proportions of CD8+ T cells were found in patients with mild disease.
- Yanchun Peng
- Alexander J. Mentzer
- Tao Dong
ArticleNature ImmunologyThe dynamic changes in cytokine responses in COVID-19: a snapshot of the current state of knowledge
“The role of cytokines in COVID-19” online symposium was presented on 18 June 2020 by the NIH/FDA Immunology and Cytokine Interest Groups and was purposed to discuss our rapidly changing understanding of COVID-19-related cytokine responses in different stages of infection, including the etiologies, downstream consequences and possible mitigation strategies. The recording is available athttps://nci.rev.vbrick.com/sharevideo/03106730-66cc-47ba-870b-f6e6274a998a.
- Maja Buszko
- Jung-Hyun Park
- Amy S. Rosenberg
Meeting ReportNature ImmunologySARS-CoV-2 infection of human ACE2-transgenic mice causes severe lung inflammation and impaired function
Diamond and colleagues generate a K18-hACE2 model of SARS-CoV-2 infection that shares many features of severe COVID-19 infection and can be used to define the basis of lung disease and test immune and antiviral-based countermeasures.
- Emma S. Winkler
- Adam L. Bailey
- Michael S. Diamond
ArticleNature ImmunologyORF8 and ORF3b antibodies are accurate serological markers of early and late SARS-CoV-2 infection
Accurate serology testing is urgently needed to help diagnose SARS-CoV-2 infection. Here Valkenburg and colleagues use a luciferase immunoprecipitation system to assess the antibody responses to 15 different SARS-CoV-2 antigens in patients with COVID-19 and find ORF8 and ORF3b antibodies, taken together as a cluster of points, identified 96.5% of COVID-19 samples at early and late time points of disease with 99.5% specificity
- Asmaa Hachim
- Niloufar Kavian
- Sophie A. Valkenburg
Technical ReportNature ImmunologySingle-cell landscape of immunological responses in patients with COVID-19
Severe COVID-19 is characterized—among other things—by a hyperinflammatory state. Wang and colleagues describe the single-cell transcriptional landscape of moderate, severe and convalescent cases of patients with COVID-19.
- Ji-Yuan Zhang
- Xiang-Ming Wang
- Fu-Sheng Wang
ResourceNature ImmunologyDrama out of a crisis: the cultural sector responds to healthcare professionals impacted by COVID-19
Support for healthcare workers impacted by COVID-19 comes from the performing arts.
- Alex Mermikides
World ViewNature ImmunologyTLR2 senses the SARS-CoV-2 envelope protein to produce inflammatory cytokines
The innate sensors of SARS-CoV-2 are still being determined. Kanneganti and colleagues find that SARS-CoV-2 envelope protein is sensed by TLR2 and this drives pathogenic inflammatory cytokine production.
- Min Zheng
- Rajendra Karki
- Thirumala-Devi Kanneganti
ArticleNature ImmunologyRIG-I triggers a signaling-abortive anti-SARS-CoV-2 defense in human lung cells
RIG-I is a cytosolic nucleic acid sensor triggering type I IFN production. Takaoka and colleagues find that RIG-I recognizes SARS-CoV-2 RNA in a noncanonical manner and fails to activate type I IFN, but it directly restricts viral replication.
- Taisho Yamada
- Seiichi Sato
- Akinori Takaoka
LetterNature Immunology