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Animals

Journal Description

Animals

Animals is an international, peer-reviewed, open access journal devoted entirely to animals, including zoology and veterinary sciences, published semimonthly online by MDPI. The World Association of Zoos and Aquariums (WAZA),European College of Animal Welfare and Behavioural Medicine (ECAWBM), and Federation of European Laboratory Animal Science Associations (FELASA) are affiliated withAnimals and their members receive a discount on the article processing charges.
  • Open Access— free for readers, witharticle processing charges (APC) paid by authors or their institutions.
  • High Visibility: indexed withinScopus,SCIE (Web of Science),PubMed,PMC,Embase,PubAg,AGRIS,Animal Science Database,CAB Abstracts, andother databases.
  • Journal Rank: JCR - Q1 (Veterinary Sciences) / CiteScore - Q1 (General Veterinary )
  • Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 16.1 days after submission; acceptance to publication is undertaken in 2.5 days (median values for papers published in this journal in the second half of 2024).
  • Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
  • Companion journals forAnimals include:Birds, Ruminants andZoonotic Diseases.
Impact Factor: 2.7 (2023); 5-Year Impact Factor: 3.0 (2023)

Latest Articles

19 pages, 5083 KiB  
Article
The Stalk and 1B Domains Are Required for Porcine Deltacoronavirus Helicase NSP13 to Separate the Double-Stranded Nucleic Acids, and the Deletion of the ZBD Impairs This Activity
byChengcheng Wu,Lihan Tao,Quanyong Zhou,Fanfan Zhang andYanbing Zeng
Animals2025,15(6), 865; https://doi.org/10.3390/ani15060865 (registering DOI) - 18 Mar 2025
Abstract
The nonstructural protein 13 (NSP13) of PDCoV is a highly conservative helicase and plays key roles in viral replication. NSP13 contains a zinc-binding domain (ZBD), a helical Stalk domain, a beta-barrel 1B domain, and a core helicase domain. However, the specific functions of [...] Read more.
The nonstructural protein 13 (NSP13) of PDCoV is a highly conservative helicase and plays key roles in viral replication. NSP13 contains a zinc-binding domain (ZBD), a helical Stalk domain, a beta-barrel 1B domain, and a core helicase domain. However, the specific functions of these domains of PDCoV NSP13 remain largely unknown. Here, we expressed and purified the wild-type NSP13WT and various mutants with domain deletions, and the activities of these proteins were analyzed using multiple methods. We found that NSP13ΔZBD possessed the abilities to hydrolyze ATP and unwind double-stranded nucleic acids, but the unwinding efficiency was lower than that of NSP13WT. In contrast, NSP13ΔZBD-Stalk, NSP13Δ1B, and NSP13ΔZBD-Stalk-1B all lost their unwinding activity, but not their ATPase activity. These results revealed that the deletion of the ZBD impaired the unwinding activity of PDCoV helicase NSP13, and the Stalk and 1B domains were critical for NSP13 to separate the duplexes. The identification of the roles of each domain in this study was helpful to gain an in-depth understanding of the overall functions of helicase NSP13, providing a theoretical basis for the development of antiviral drugs targeting helicase.Full article
(This article belongs to the SectionPigs)
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14 pages, 780 KiB  
Review
Exploring the Use of Helminthophagous Fungi in the Control of Helminthoses in Horses: A Review
byTábata Alves do Carmo,Júlia dos Santos Fonseca,Fabio Ribeiro Braga,Adolfo Paz-Silva,Ricardo Velludo Gomes de Soutello andJackson Victor de Araújo
Animals2025,15(6), 864; https://doi.org/10.3390/ani15060864 (registering DOI) - 18 Mar 2025
Abstract
Equine farming faces growing challenges with helminthoses, aggravated by the indiscriminate use of anthelmintics without technical criteria. This practice favors resistance to these drugs, generates residues in animal products, compromises food safety and human health, and, when excreted in large quantities, negatively impacts [...] Read more.
Equine farming faces growing challenges with helminthoses, aggravated by the indiscriminate use of anthelmintics without technical criteria. This practice favors resistance to these drugs, generates residues in animal products, compromises food safety and human health, and, when excreted in large quantities, negatively impacts environmental health by affecting invertebrates and fecal microorganisms. This highlights the importance of the One Health approach. A promising alternative is biological control with nematophagous or helminthophagous fungi such asDuddingtonia flagrans,Pochonia chlamydosporia,Arthrobotrys oligospora,Monacrosporium thaumasium,Mucor circinelloides andPurpureocillium lilacinum. Due to their different mechanisms of action, ovicidal and predatory fungi, when used together, can act in a complementary and synergistic way in the biological control of helminths, increasing their effectiveness in reducing parasitic infections. The use of these fungi through biosynthesized nanoparticles from fungal filtrates is also emerging as a new approach to nematode control. It can be administered through feed supplementation in commercial formulations. The aim of this review is to explore the use of helminthophagous fungi in the control of helminthiases in horses, highlighting their potential as a biological alternative. It also aims to understand how these fungi can contribute effectively and sustainably to parasite management in horses.Full article
(This article belongs to the Special IssueAdvances in the Diagnosis of Parasitic Infections in Animals)
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15 pages, 529 KiB  
Article
Effect ofVachellia tortilis Leaf Meal and Sunflower Oil Inclusion in Supplementary Diets of Lambs on In Vitro Short-Chain Fatty Acid and Gas Production and In Vivo Growth Performance
byMahlogonolo Daniel Serumula,Bulelani Nangamso Pepeta,Mehluli Moyo,Terence Nkwanwir Suinyuy andIgnatius Verla Nsahlai
Animals2025,15(6), 863;https://doi.org/10.3390/ani15060863 - 17 Mar 2025
Abstract
This study examined the effect of dietary Vachellia tortilis leaf meal and sunflower oil inclusion in supplementary diets on in vitro short-chain fatty acid (SCFA) and gas production and the in vivo growth performance of lambs. Four concentrate dietary treatments comprising control (CL), [...] Read more.
This study examined the effect of dietary Vachellia tortilis leaf meal and sunflower oil inclusion in supplementary diets on in vitro short-chain fatty acid (SCFA) and gas production and the in vivo growth performance of lambs. Four concentrate dietary treatments comprising control (CL), Vachellia tortilis leaf meal (VT), sunflower oil (SFO), and Vachellia tortilis leaf meal sunflower oil (VSFO) were formulated. Eight Merino lambs were blocked into two live weight blocks where animals within each block were randomly assigned to dietary treatments, making two animals per treatment. Lambs were offered a concentrate diet of 480 g/day per head, with urea-treated hay fed as a basal diet. Dietary effects were evaluated for in vitro short-chain fatty acid and gas production and 28-day growth performance of lambs over three study periods. The inclusion of VT and SFO showed no statistically significant effect on total SCFAs, acetate to propionate (A:P) ratio, methane (CH4), and carbon dioxide (CO2) production (p > 0.05), which might be attributable to low experimental units. The hourly A:P ratio and CH4 yield were the highest (p < 0.05) at 16 h of incubation. The inclusion of VT showed no statistically significant effect on growth performance and gas production due to the small sample size. Therefore, VT can be explored as a supplementary protein source in lamb diets given the impression of not showing any causative adverse effects on growth performance and in vitro gas production, although further research with larger sample sizes is needed to confirm these findings.Full article
(This article belongs to the SectionAnimal System and Management)
11 pages, 2230 KiB  
Article
Semi-Feral Horse Grazing Benefits the Grassland Diversity of Flowering Plants Including a Pollinator-Promoting Indicator Species
byCarl-Gustaf Thulin,Yufei Chen andPablo Garrido
Animals2025,15(6), 862;https://doi.org/10.3390/ani15060862 - 17 Mar 2025
Abstract
European grasslands and their biodiversity are declining rapidly due to land use changes, which highlight the need to develop effective restoration strategies. This study investigates the impact of reintroducing the Swedish national horse breed (the Gotland Russ) on grassland plant diversity and evenness [...] Read more.
European grasslands and their biodiversity are declining rapidly due to land use changes, which highlight the need to develop effective restoration strategies. This study investigates the impact of reintroducing the Swedish national horse breed (the Gotland Russ) on grassland plant diversity and evenness in abandoned agricultural landscapes in Southeast Sweden. Twelve horses were introduced into three 10–13-hectare enclosure replicates (four horses per enclosure) in a three-year (2014–2016) rewilding experiment. Plant species richness, evenness, and diversity were investigated in both grazed and un-grazed conditions. The results indicate that horse grazing significantly increased grassland plant species diversity and richness, with higher Shannon and Simpson’s diversity indices in grazed areas. In addition, the abundance of white clover (Trifolium repens), a signal species beneficial to pollinators, increased significantly in grazed areas. These findings emphasize the need for integrating large herbivore grazing into ecological restoration practices. Considering the recently enacted EU Nature Restoration Law, which aims to restore 20% of Europe’s degraded ecosystems by 2030, this research provides critical insights into scalable restoration methods. The implementation of restoration strategies that include large herbivores may enhance the resilience and biodiversity of European grasslands, thereby aligning with the EU’s restoration goals.Full article
(This article belongs to the SectionEquids)
17 pages, 19216 KiB  
Article
Growth Performance and Gut Health of Cold-Stressed Broilers in Response to Supplementation with a Combination of Sodium Butyrate and Vitamin D3
byHang Gao,Yi Wang,Xingkai Zhao,Yaling Yu,Yizhe Guo,Zhendong Li andZhenlei Zhou
Animals2025,15(6), 861;https://doi.org/10.3390/ani15060861 - 17 Mar 2025
Abstract
The current experiment aimed to investigate the effects of sodium butyrate (SB) and vitamin D3 (VD3) supplementation on the growth performance, immune status, antioxidant capacity, and gut health of young broilers under cold stress. A total of 144 1-day-old Arbor Acres chicks were [...] Read more.
The current experiment aimed to investigate the effects of sodium butyrate (SB) and vitamin D3 (VD3) supplementation on the growth performance, immune status, antioxidant capacity, and gut health of young broilers under cold stress. A total of 144 1-day-old Arbor Acres chicks were randomly allotted to three treatments with 6 replicates of 8 birds: (1) basal diet; (2) basal diet + cold stress; and (3) basal diet with 1 g/kg SB and 2000 IU/kg VD3 + cold stress. Birds were exposed to cold stress at 16 ± 1 °C for 72 h (d 18–21) and 26 ± 1 °C for the control. The results indicated that the SB/VD3 diet could alleviate the reduction in average daily gain (ADG) caused by cold stress (p < 0.05). The SB/VD3 diet decreased the serum endotoxin level and ileal interleukin-1β gene expression and upregulated interleukin-10 and nuclear factor erythroid 2-related factor 2 (Nrf2) gene expression compared with cold-stressed birds (p < 0.05). Furthermore, cold stress altered the composition of gut microbiota, including a decrease inClostridium_sensu_stricto_1, whereas the SB/VD3 diet prevented the reduction. In conclusion, the SB/VD3 diet mitigated the negative effects of cold stress on growth performance and the intestines by strengthening intestinal barrier function and stabilizing gut microbiota balance in broiler chicks, and these results can help to manage cold stress.Full article
(This article belongs to the SectionPoultry)
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13 pages, 2477 KiB  
Article
Characterising Sex-Specific Metabolite Differences in New Zealand Geoduck (Panopea zelandica) Using LC-MS/MS Metabolomics
byLeonie Venter,Andrea C. Alfaro,Jeremie Zander Lindeque,Peet J. Jansen van Rensburg,Natalí J. Delorme,Norman L. C. Ragg andLeonardo N. Zamora
Animals2025,15(6), 860;https://doi.org/10.3390/ani15060860 - 17 Mar 2025
Abstract
Geoduck aquaculture is becoming a key component in meeting international market demand, given the natural and regulatory restrictions on wild geoduck supply. Geoduck clams are not sexually dimorphic, making it practically unfeasible to distinguish between males and females prior to a spawning event. [...] Read more.
Geoduck aquaculture is becoming a key component in meeting international market demand, given the natural and regulatory restrictions on wild geoduck supply. Geoduck clams are not sexually dimorphic, making it practically unfeasible to distinguish between males and females prior to a spawning event. To facilitate increased production of geoduck, a better understanding of reproductive biology and associated targeted bio-markers is required. In this study, metabolomics was utilised as a research tool to distinguish between metabolites related to male and female New Zealand geoduck (Panopea zelandica), gill and muscle samples collected from broodstock individuals housed in an experimental hatchery. A total of 17 metabolites were detected, showing significant differences between sexes. The findings indicate that metabolites associated with lipid biosynthesis were increased in female clams to support reproductive functions. An increase in carbohydrate-linked metabolic pathways was detected in male geoduck, arguably to sustain sperm production. Taurine has been reported as a biomarker to distinguish between male and female bivalves in other studies and is confirmed within this study, with significant elevation in male adductor muscle tissue. Moreover, male geoduck had increased purine and pyrimidine biosynthesis, supporting energy needs. This study provides useful sex biomarkers for future breeding strategies ofP. zelandica.Full article
(This article belongs to the Special IssueRecent Research on Shellfish Aquaculture and Reproduction)
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8 pages, 215 KiB  
Article
Blood Vitamin Concentrations in Pond Sliders (Trachemys scripta) Under Human Care in Central Europe and Possible Seasonal and Sex-Specific Influences
byChristoph Leineweber,Gregor Geisler,Sabine Öfner andRachel E. Marschang
Animals2025,15(6), 859;https://doi.org/10.3390/ani15060859 - 17 Mar 2025
Abstract
Vitamin A deficiency is common in pond sliders, and vitamin E and B1 deficiencies have also been described in carnivorous aquatic species such as crocodiles, but otherwise little is known about vitamin concentrations in the blood of reptiles, and reference intervals only exist [...] Read more.
Vitamin A deficiency is common in pond sliders, and vitamin E and B1 deficiencies have also been described in carnivorous aquatic species such as crocodiles, but otherwise little is known about vitamin concentrations in the blood of reptiles, and reference intervals only exist for a few vitamins in a few species. The aim of this study was therefore to measure vitamins A, B1, B2, B6, B9, B12, and E in the heparinized whole blood and plasma of pond sliders (Trachemys scripta) (n = 188) from April to September 2022 using high-performance liquid chromatography (HPLC) and spectrophotometry. In addition to establishing reference intervals, possible influencing factors, including the season of blood sampling and the sex of the turtles, were evaluated. The median concentrations measured were as follows: vitamin A—0.17 mg/L, B1—59.10 µg/L, B2—693.50 µg/L, B6—2.375 µg/L, B9—16.06 ng/mL, B12—3225.00 pg/mL, and E—7.59 mg/L. Significant (p ≤ 0.05) seasonal variations were found for vitamin A, B1, and B9, and sex-specific variations were found for vitamin E. The results show that factors such as sex and the time of year play a role in vitamin levels in the blood of turtles and should be considered when interpreting blood results. The reference intervals established in the present study serve as a basis for further studies and help to control and improve the vitamin supply of the turtles, contributing to the better husbandry and nutrition of this species in human care.Full article
20 pages, 2796 KiB  
Article
Distribution Shifts ofAcanthaster solaris Under Climate Change and the Impact on Coral Reef Habitats
byShangke Su,Jinquan Liu,Bin Chen,Wei Wang,Jiaguang Xiao,Yuan Li,Jianguo Du,Jianhua Kang,Wenjia Hu andJunpeng Zhang
Animals2025,15(6), 858;https://doi.org/10.3390/ani15060858 - 17 Mar 2025
Abstract
Pacific crown-of-thorns starfish (Acanthaster solaris) outbreaks pose a significant threat to coral reef ecosystems, with climate change potentially exacerbating their distribution and impact. However, there remains only a small number of predictive studies on how climate change drives changes in the [...] Read more.
Pacific crown-of-thorns starfish (Acanthaster solaris) outbreaks pose a significant threat to coral reef ecosystems, with climate change potentially exacerbating their distribution and impact. However, there remains only a small number of predictive studies on how climate change drives changes in the distribution patterns ofA. solaris, and relevant assessments of the impact of these changes on coral reef areas are lacking. To address this issue, this study investigated potential changes in the distribution ofA. solaris under climate change and its impact onAcropora coral habitats. Using a novel two-step framework, we integrated both abiotic and biological (Acropora distribution) predictors into species distribution modeling to project future shifts inA. solaris habitats. We created the first reliable set of current and future global distribution maps forA. solaris using a comprehensive dataset and machine learning approach. The results showed significant distribution shifts under three climate change scenarios (SSP1-2.6, SSP2-4.5, and SSP5-8.5), with expanded ranges under all scenarios, and the greatest expansion occurring near 10° S. Asymmetry in the latitudinal shifts in habitat boundaries suggests that the Southern Hemisphere may face a more severe expansion ofA. solaris. Regions previously unsuitable forA. solaris, such as parts of New Zealand, might experience new invasions. Additionally, our findings highlight the potential increase in predatory pressure on coral reefs under SSP2-4.5 and SSP5-8.5 scenarios, particularly in the Western Coral Triangle and Northeast Australian Shelf, where an overlap betweenA. solaris andAcropora habitats is significant. This study provides critical insights into the ecological dynamics ofA. solaris in the context of climate change, and the results have important implications for coral reef management. These findings highlight the need for targeted conservation efforts and the development of mitigation strategies to protect coral reefs from the growing threat posed byA. solaris.Full article
(This article belongs to the SectionAquatic Animals)
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15 pages, 3735 KiB  
Article
Impacts of the COVID-19 Pandemic on Wildlife in Huangshan Scenic Area, Anhui Province, China
byYuting Lu,Yaqiong Wan,Lanrong Wang,Dapeng Pang,Yinfan Cai,Yijun Wu,Mingxia Tang,Jiaqi Li andBaowei Zhang
Animals2025,15(6), 857;https://doi.org/10.3390/ani15060857 - 17 Mar 2025
Abstract
Human activities impact ecosystems globally, and understanding human–wildlife coexistence is crucial for species conservation. This study analyzed trends in local wildlife populations before and during the COVID-19 pandemic to assess their response to human disturbance. From 2017 to 2022, 60 camera sites were [...] Read more.
Human activities impact ecosystems globally, and understanding human–wildlife coexistence is crucial for species conservation. This study analyzed trends in local wildlife populations before and during the COVID-19 pandemic to assess their response to human disturbance. From 2017 to 2022, 60 camera sites were monitored, and seven species with the largest population size—excluding rodents—were selected for analysis. The results revealed that the presence of humans (p = 0.025) and domesticated animals (cats and dogs,p = 0.002) significantly decreased during the pandemic. Conversely, five species (except the Tibetan macaque and mainland serow) showed habitat expansion and population growth (p < 0.05), which may be related to their avoidance of human presence or artificial structures such as roads and tourism facilities. In addition, the analysis showed that most species, except the Tibetan macaque and wild boar, adjusted their activity patterns, showing increased diurnal activity when human disturbances were reduced (RR > 0). These findings suggest that species may adapt their behaviors to avoid human presence. This study highlights the negative impacts of human activities on local wildlife and emphasizes the need for stronger conservation and management efforts to mitigate human disturbances in scenic areas.Full article
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19 pages, 776 KiB  
Article
Behaviors of Shelter Dogs During Harnessing and Leash Walks: Prevalence, Demographics, and Length of Stay
byBetty McGuire,Bailey Guy,Miles Garland andAlexandra Jackson
Animals2025,15(6), 856;https://doi.org/10.3390/ani15060856 - 17 Mar 2025
Abstract
Length of stay is an important metric for animal shelters, and studies have identified physical characteristics of dogs, and some behaviors, that predict length of stay. Although many shelters include leash walks when introducing dogs to potential adopters, it is unknown whether behaviors [...] Read more.
Length of stay is an important metric for animal shelters, and studies have identified physical characteristics of dogs, and some behaviors, that predict length of stay. Although many shelters include leash walks when introducing dogs to potential adopters, it is unknown whether behaviors during harnessing and walking influence length of stay. During 707 walks of 120 dogs at a New York shelter, we recorded excitable behaviors, such as jumping on handlers, grabbing the leash, and pulling on the leash, whose measures of prevalence were largely unknown for shelter dogs. We also examined whether dog demographic characteristics predicted behaviors and whether behaviors predicted length of stay. During harnessing, jumping on handlers had the highest prevalence (45%), while during walking, pulling on the leash was most prevalent (86%). Dog age was the most common demographic predictor of behaviors, with jumping on handlers and total pulls/walk decreasing with age. Grabbing the leash predicted length of stay, with longer stays for dogs that displayed this behavior. These two findings suggest that it would be beneficial for shelter staff and volunteers to focus training efforts on younger dogs and those that grab the leash.Full article
(This article belongs to the SectionCompanion Animals)
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10 pages, 740 KiB  
Article
In Vitro Evaluation of ThreePisum sativum L. Varieties to Partially Replace Soybean and Corn Meal in Dairy Cow Diet
byMaria Ferrara,Emanuele D’Anza,Teresa Montefusco,Piera Iommelli,Barbara Piccirillo,Alessio Ruggiero andAlessandro Vastolo
Animals2025,15(6), 855;https://doi.org/10.3390/ani15060855 - 17 Mar 2025
Abstract
Pea (Pisum sativum L.) seeds are valuable feed ingredients due to their high-quality protein and starch digestibility, making them a viable alternative to soybean meal and corn grain. This study evaluated the nutritional value of three commercial pea varieties (Ganster, Peps, and [...] Read more.
Pea (Pisum sativum L.) seeds are valuable feed ingredients due to their high-quality protein and starch digestibility, making them a viable alternative to soybean meal and corn grain. This study evaluated the nutritional value of three commercial pea varieties (Ganster, Peps, and Poseidon) through in vitro trials. Each variety was incorporated into an experimental diet (GNS, PES, and PNS) for dairy cows, partially replacing soybean and corn meals. These diets were compared to a control diet containing only soybean and corn meals. All diets were incubated anaerobically for 120 h with dairy cow rumen liquor. Results showed that GNS and PES diets enhanced protein degradability (p < 0.05) and fermentation kinetics (p < 0.001). Additionally, all experimental diets reduced ammonia production (p < 0.001), while the PES diet increased (p < 0.001) volatile fatty acid production. Among the tested varieties, Peps demonstrated the greatest potential by improving protein metabolism and volatile fatty acid production. These findings suggest that pea grains can be a suitable alternative in dairy cow diets, supporting efficient ruminal fermentation and nutrient utilization.Full article
(This article belongs to the Special IssueAlternative Protein Sources for Animal Feeds)
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13 pages, 1601 KiB  
Article
A Preliminary Study: Evaluation of Oral Trazodone as a Strategy to Reduce Anesthetic Requirements in Bitches Undergoing Ovariectomy
byNerea Cambeiro-Camarero,Silvia Fernández-Martín andAntonio González-Cantalapiedra
Animals2025,15(6), 854;https://doi.org/10.3390/ani15060854 - 17 Mar 2025
Abstract
The objective of this study was to evaluate the effects of trazodone as part of premedication in routine surgical procedures. A prospective, randomized, double-blinded clinical study was conducted on 16 adult female dogs undergoing elective ovariectomy. Behavioral responses were assessed after oral administration [...] Read more.
The objective of this study was to evaluate the effects of trazodone as part of premedication in routine surgical procedures. A prospective, randomized, double-blinded clinical study was conducted on 16 adult female dogs undergoing elective ovariectomy. Behavioral responses were assessed after oral administration of trazodone (5 mg/kg) in eight dogs and compared with a control group (n = 8). Sedation levels at the time of induction and the required dose of propofol were recorded. Additionally, intraoperative fentanyl IV boluses (2.5 µg/kg) administered in response to surgical pain, along with heart rate (HR) and non-invasive arterial pressure (NIAP), were compared between groups. Dogs receiving trazodone exhibited significantly lower stress scores on the Clinic Dog Stress Scale (CDSS) and fewer episodes of vomiting after premedication, and they required lower doses of both propofol and intraoperative analgesia. These findings suggest that oral trazodone administration two hours before hospital arrival may help reduce preoperative stress in dogs undergoing elective ovariectomy. However, further studies with larger sample sizes are needed to confirm these results and fully evaluate the role of trazodone in preoperative protocols.Full article
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22 pages, 11556 KiB  
Article
Enhanced Methodology and Experimental Research for Caged Chicken Counting Based on YOLOv8
byZhenlong Wu,Jikang Yang,Hengyuan Zhang andCheng Fang
Animals2025,15(6), 853;https://doi.org/10.3390/ani15060853 - 16 Mar 2025
Abstract
Accurately counting chickens in densely packed cages is a major challenge in large-scale poultry farms. Traditional manual counting methods are labor-intensive, costly, and prone to errors due to worker fatigue. Furthermore, current deep learning models often struggle with accuracy in caged environments because [...] Read more.
Accurately counting chickens in densely packed cages is a major challenge in large-scale poultry farms. Traditional manual counting methods are labor-intensive, costly, and prone to errors due to worker fatigue. Furthermore, current deep learning models often struggle with accuracy in caged environments because they are not well-equipped to handle occlusions. In response, we propose the You Only Look Once-Chicken Counting Algorithm (YOLO-CCA). YOLO-CCA improves the YOLOv8-small model by integrating the CoordAttention mechanism and the Reversible Column Networks backbone. This enhancement improved the YOLOv8-small model’sF1 score to 96.7% (+3%) and average precision50:95 to 80.6% (+2.8%). Additionally, we developed a threshold-based continuous frame inspection method that records the maximum number of chickens per cage with corresponding timestamps. The data are stored in a cloud database for reliable tracking during robotic inspections. The experiments were conducted in an actual poultry farming environment, involving 80 cages with a total of 493 chickens, and showed that YOLO-CCA raised the chicken recognition rate to 90.9% (+13.2%). When deployed on a Jetson AGX Orin industrial computer using TensorRT, the detection speed increased to 90.9 FPS (+57.6 FPS), although the recognition rate slightly decreased to 93.2% (−2.9%). In summary, YOLO-CCA reduces labor costs, improves counting efficiency, and supports intelligent poultry farming transformation.Full article
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22 pages, 8910 KiB  
Article
Genome-Wide Identification and Evolutionary Analysis ofIonotropic Receptors Gene Family: Insights into Olfaction Ability Evolution and Antennal Expression Patterns inOratosquilla oratoria
byWen-Qi Yang,Ge Ding,Lin-Lin Wang,Chi-Jie Yin,Hai-Yue Wu,Hua-Bin Zhang,Qiu-Ning Liu,Sen-Hao Jiang,Bo-Ping Tang,Gang Wang andDai-Zhen Zhang
Animals2025,15(6), 852;https://doi.org/10.3390/ani15060852 - 16 Mar 2025
Abstract
Olfaction plays a crucial role in crustaceans for essential activities such as foraging and predator evasion. Among the components involved in olfactory perception,Ionotropic Receptors (IRs) are particularly important.Oratosquilla oratoria, a perennial crustacean of substantial economic and ecological value, [...] Read more.
Olfaction plays a crucial role in crustaceans for essential activities such as foraging and predator evasion. Among the components involved in olfactory perception,Ionotropic Receptors (IRs) are particularly important.Oratosquilla oratoria, a perennial crustacean of substantial economic and ecological value, serves as an ideal model for studying olfactory mechanisms. Identifying theIR chemosensory genes inO. oratoria enhances our understanding of its olfactory recognition system. Based on the whole-genome data ofO. oratoria, we identified and analyzed 50 members of theIR gene family (OratIRs) through bioinformatics approaches. These genes were classified into subfamilies of co-receptorIRs and tuningIRs. The physicochemical properties of the encoded proteins exhibit marked variability, indicating distinct roles. The motif types and conserved domains among these subfamilies display certain similarities, but their gene structures differ markedly. Furthermore, we found thatOratIR25a,OratIR07629, andOratIR14286 are key nodes in protein–protein interaction networks, coordinating organisms’ responses to signals like temperature and acids. We utilized fluorescence in situ hybridization (FISH) to find thatOratIR75-1 andOratIR8a demonstrated robust expression signals in the antennae of theO. oratoria. These findings lay a foundation for further investigations and elucidate the functional roles of olfactory receptor genes in crustaceans.Full article
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18 pages, 1398 KiB  
Article
Even Low Amounts of Amorphous Lignocellulose Affect Some Upper Gut Parameters, but They Do Not Modify Ileal Microbiota in Young Broiler Chickens
byValéria Farkas,András Mayer,Judit Poór,Eszter Péterné Farkas,Kesete Goitom Tewelde,Brigitta Kiss,Nikoletta Such,László Pál,Gábor Csitári andKároly Dublecz
Animals2025,15(6), 851;https://doi.org/10.3390/ani15060851 - 16 Mar 2025
Abstract
A feeding trial was carried out using 576 Ross 308 male chickens to test the effects of an amorphous lignocellulose (LC) product (Arbocel). Three dietary treatments (control, 0.5% LC (LC 0.5), and 0.8% LC (LC 0.8) were used, and the diets were fed [...] Read more.
A feeding trial was carried out using 576 Ross 308 male chickens to test the effects of an amorphous lignocellulose (LC) product (Arbocel). Three dietary treatments (control, 0.5% LC (LC 0.5), and 0.8% LC (LC 0.8) were used, and the diets were fed in eight replicate pens of 24 chickens. The LC treatments did not modify the weight gain of the chickens, but they tended to decrease the feed intake and FCR in the grower phase. The high swelling characteristics of LC resulted in lower dry matter (DM) contents in the crop(p < 0.002) and gizzard (p < 0.047) on day 14 and day 24, respectively. The lower pH in the gizzard and duodenum of LC diets suggests longer retention time and more HCl secretion in the proventriculus and gizzard. Except for α-amylase on day 24, the treatments did not modify the digestive enzyme content of the jejunum. The microbiota diversity and microbiota composition of ileal contents were affected only by the age of birds. The results suggest that the LC product can exert its potential positive effects mainly in the upper part of the digestive tract due to its special physical characteristics. LC can slow down the passage rate in the gizzard and modify the digestion and the dynamics of water absorption from the jejunum and ileum.Full article
(This article belongs to the Special IssueNovel Feed Additives in Livestock and Poultry Nutrition)
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32 pages, 6546 KiB  
Review
A Comprehensive Review of Canine and Feline Ventricular Septal Defects—From Pathogenesis to Long-Term Follow-Up
bySzymon Graczyk,Arkadiusz Grzeczka andUrszula Pasławska
Animals2025,15(6), 850;https://doi.org/10.3390/ani15060850 - 15 Mar 2025
Abstract
Congenital heart defects (CHDs) in dogs and cats represent a definite minority of cardiac patients. One of the most commonly diagnosed is ventricular septal defects (VSDs). These are associated with abnormal ventricular septation during the prenatal period; however, the mutations of the genes [...] Read more.
Congenital heart defects (CHDs) in dogs and cats represent a definite minority of cardiac patients. One of the most commonly diagnosed is ventricular septal defects (VSDs). These are associated with abnormal ventricular septation during the prenatal period; however, the mutations of the genes responsible for this phenomenon are not fully understood. VSDs pose a significant diagnostic challenge due to the multitude of locations in the ventricular septum where they are likely to occur. Therefore, there are many phenotypes of the defect causing many problems in terms of a common nomenclature. Among the various classifications, the latest terminology issued by The International Society for Nomenclature of Paediatric and Congenital Heart Disease (ISNPCHD) considers both electrical conduction pathways and adjacent structures to standardize nomenclature. Further, defects located at different sites can alter both prognosis and subsequent management for the patient; thus, taking accurate measurements is crucial. Among these, the Qp:Qs and VSD:Ao ratios, the direction of blood flow through the defect, its location, the diameter and maximum flow velocity, and the pressure difference between the RV and LV are indicated. Emerging technologies such as 3D echocardiography and cardiac magnetic resonance may provide additional diagnostic value. Altogether, along with clinical symptoms, we should determine further management, involving the monitoring of the patient, the implementation of pharmacological treatment, or referral for surgical closure of the VSD. This review summarizes current knowledge on VSD, where the pathogenesis of the condition, diagnosis, and management, including conventional and surgical methods as well as long-term follow-up, are described, providing a complete overview of the issue.Full article
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15 pages, 1624 KiB  
Communication
Genetic Diversity Estimation and Genome-Wide Selective Sweep Analysis of the Bazhou Yak
byBaigao Yang,Hang Zhang,Xiaoyi Feng,Zhou Yu,Jianhua Cao,Yifan Niu,Pengcheng Wan,Gang Liu andXueming Zhao
Animals2025,15(6), 849;https://doi.org/10.3390/ani15060849 - 15 Mar 2025
Abstract
The Bazhou yak, a major native meat yak breed in Xinjiang, China, is renowned for its fast growth rate, strong adaptability, and particularly high intramuscular fat (IMF) content. However, limited knowledge regarding its phylogenetic history and genomic composition has hindered its long-term conservation [...] Read more.
The Bazhou yak, a major native meat yak breed in Xinjiang, China, is renowned for its fast growth rate, strong adaptability, and particularly high intramuscular fat (IMF) content. However, limited knowledge regarding its phylogenetic history and genomic composition has hindered its long-term conservation and utilization. This study evaluated the genetic diversity, population phylogenetics, and genome-wide selective sweep analysis (GWSA) of 100 newly obtained Bazhou yaks through genome resequencing, as well as 340 public yak genomes from nine other populations on the Qinghai–Tibet Plateau. The results revealed moderate diversity, lower genomic inbreeding levels, and rapid linkage disequilibrium (LD) decay in Bazhou yaks. Principal component analysis (PCA) and phylogenetic analysis showed a clear separation of Bazhou yaks from other yak populations, indicating the Bazhou yak as an independent genetic population. Furthermore, less genetic differentiation was found between the Bazhou yak and the Huanhu yak, while ADMIXTURE analysis revealed a common ancestral lineage between Bazhou yaks and Huanhu yaks, indicating an important genetic contribution of the Qinghai yak population to Bazhou yaks. The GWSA identified a total of 833 selected genes in Bazhou yaks using the top 5% interaction windows of both parameters (FST,Pi ratio, and XP-EHH). A significant number of these genes are related to fat synthesis and deposition, such asMTOR,APOA1, andGPAT4. In summary, this study sheds light on the phylogenetic status and distinctive genomic features of Bazhou yaks, which facilitates our understanding of the genetic basis of the IMF phenotype in Bazhou yaks.Full article
(This article belongs to the SectionAnimal Genetics and Genomics)
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19 pages, 852 KiB  
Article
Heat Stress in Growing–Finishing Pigs: Effects of Low Protein with Increased Crystalline Amino Acids on Growth, Gut Health, Antioxidant Status and Microbiome
byJihwan Lee,Sungwoo Park,Hyunju Park,Junseon Hong,Yongmin Kim,Yongdae Jeong,Soojin Sa,Yohan Choi andJoeun Kim
Animals2025,15(6), 848;https://doi.org/10.3390/ani15060848 - 15 Mar 2025
Abstract
A total of sixty crossbred ([Landrace × Yorkshire] × Duroc) pigs with an initial body weight of 46.34 ± 0.13 kg were randomly assigned to four treatments under thermoneutral (TN, 22 °C) or heat-stress (HS, 31 °C) conditions for 54 d trial (Phase [...] Read more.
A total of sixty crossbred ([Landrace × Yorkshire] × Duroc) pigs with an initial body weight of 46.34 ± 0.13 kg were randomly assigned to four treatments under thermoneutral (TN, 22 °C) or heat-stress (HS, 31 °C) conditions for 54 d trial (Phase 1: 0–26 d; Phase 2: 27–54 d): a control diet (16% CP in phase 1, 14% CP in phase 2) under TN (PC), a control diet under HS (NC), a low crude protein (LCP) diet (14% CP in phase 1, 12% CP in phase 2) under HS (LCP) and an LCP diet with increased crystalline AA (an increase in 5% in Lys, Met, Thr and Trp based on calculated SID AA) (LCP5) under HS. Experimental treatments consisted of five replicate pens, with three pigs per pen. The results showed that HS reduced (p < 0.05) growth performance and nutrient digestibility compared to TN. However, LCP5 improved (p < 0.05) growth performance and nutrient digestibility compared to other HS groups. Heat stress adversely affected (p < 0.05) intestinal morphology, gut integrity and serum oxidative markers, but these effects were alleviated (p < 0.05) by LCP5 supplementation. Notably, LCP5 improved (p < 0.05) the production of butyric acids among short-chain fatty acid production and decreased (p < 0.05)proteobacteria andSpirochaetota in phylum in feces. These findings highlight the potential of LCP diets supplemented with crystalline AA as an effective nutritional strategy to mitigate the negative effects of HS on pigs, enhancing their performance, gut health and overall welfare in high-temperature environments.Full article
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13 pages, 910 KiB  
Article
Evaluation of the Effectiveness of a Phytogenic Supplement (Alkaloids and Flavonoids) in the Control ofEimeria spp. in Experimentally Challenged Broiler Chickens
byAnne-Sophie Hascoët,Paulina Torres-Celpa,Roberto Riquelme-Neira andHéctor Hidalgo-Olate
Animals2025,15(6), 847;https://doi.org/10.3390/ani15060847 - 15 Mar 2025
Abstract
Avian coccidiosis remains a problematic challenge in poultry farms worldwide, with increasing concerns about resistance to conventional anticoccidial drugs, highlighting the need for alternative control strategies. A total of 256 male broilers (Ross 308), 1 day old, were randomly assigned to four experimental [...] Read more.
Avian coccidiosis remains a problematic challenge in poultry farms worldwide, with increasing concerns about resistance to conventional anticoccidial drugs, highlighting the need for alternative control strategies. A total of 256 male broilers (Ross 308), 1 day old, were randomly assigned to four experimental groups (eight replicates, each containing eight chickens) to evaluate the effectiveness of a phytogenic supplement againstEimeria spp. At 14 days, broilers were challenged via oral gavage with a mixture of six strains of liveEimeria spp. oocysts (4.0 × 104 Eimeria spp. oocysts per bird). The groups included a negative control (no anticoccidials or challenge), a positive control (coccidial challenge, no anticoccidials), a phytogenic-supplemented diet based on alkaloids and flavonoids, and a diet with anticoccidials (narasin and nicarbazin). Fecal samples were collected for oocyst counts from day 14 to 23, and at 23 days (9 days post-infection), intestinal lesions and mucosa measurements were evaluated. The oocyst counts in the phytogenic and anticoccidial groups were significantly lower than in the positive control (with a reduction of 61.3% and 71.6%, respectively, compared to the positive control) (p < 0.05), with no significant differences between the phytogenic supplement and anticoccidials. The phytogenic supplement provided intermediate protection based on histopathological scores with a significantly lower histopathology score than the positive control but significantly higher than the negative control (p < 0.05). No differences in body weight, feed intake, feed conversion ratio, or mortality were observed across groups during the trial, likely due to the moderate challenge applied. In conclusion, the phytogenic supplement demonstrated anticoccidial activity comparable to narasin and nicarbazin without compromising productivity, warranting further research into its mechanisms, resistance impact, and commercial application.Full article
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17 pages, 264 KiB  
Article
Research on Energy Supply Optimization of Diets for Songliao Black Growing and Fattening Pigs at a Low Ambient Temperature
byZhaoyang Qi,Yu Zhang,Rui Han,Guixin Qin,Hailong Jiang,Dan Jiang andDongsheng Che
Animals2025,15(6), 846;https://doi.org/10.3390/ani15060846 - 15 Mar 2025
Abstract
The aim of this experiment is to investigate the effects of optimizing the dietary energy supply of Songliao Black growing and fattening pigs on their growth performance, nutrient digestibility, nitrogen balance, energy metabolism and oxidation energy supply, slaughter performance, and meat quality at [...] Read more.
The aim of this experiment is to investigate the effects of optimizing the dietary energy supply of Songliao Black growing and fattening pigs on their growth performance, nutrient digestibility, nitrogen balance, energy metabolism and oxidation energy supply, slaughter performance, and meat quality at a low ambient temperature. Forty-eight 75-day-old Songliao Black growing barrows with an initial weight of 33.38 ± 1.29 kg were randomized into two groups, with four replicates in each group and six pigs in each replicate. Two groups (CON group: low fat, normal energy; TES group: high fat, high energy) were fed isonitrogenous diets with different energy levels and fat contents. The experimental animals were raised at the same ambient temperature (10 ± 1 °C) all day. After 5 days of pre-feeding, the formal experiment began. Four Songliao Black barrows weighing approximately 80 kg were selected from each group for a five-day experimental period for digestibility and metabolism and respiratory calorimetry tests. All pigs (185 days of age) were slaughtered simultaneously at the end of the 110-day experimental period when their average body weight reached approximately 110 kg. The results showed that the average daily feed intake of the TES group was lower than that of the CON group (p < 0.05). Compared with the CON group, the feed-to-gain ratio was lower in the TES group during the fattening period (p < 0.05). Compared with the CON group, the crude fat digestibility, deposition energy, energy deposition rate, deposition energy of fat, and fat oxidation were higher (p < 0.05), and the intake and urinary nitrogen, carbohydrate oxidation, urinary energy, and protein oxidation were lower in the TES group (p < 0.05). Compared with the CON group, the serum high-density lipoprotein concentration, low-density lipoprotein concentration, and triglyceride concentration were higher in the TES group (p < 0.05), while alanine aminotransferase and aspartate aminotransferase concentrations were lower in the TES group (p < 0.05). Compared with the CON group, the backfat thickness was higher in the TES group (p < 0.05). Compared with the CON group, the weight gain/digestible protein and live lean meat mass/digestible protein were higher in the TES group (p < 0.05). Compared with the CON group, the yellowness (b*45min) value of the longissimus thoracis was higher in the TES group (p < 0.05), and the shear force was lower (p < 0.05). Therefore, at a low ambient temperature, appropriately increasing the levels of dietary fat and energy was beneficial for improving the production performance and energy utilization efficiency and reducing CO2 emissions and protein oxidation, saving protein resources of Songliao Black pigs.Full article
(This article belongs to the SectionPigs)
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