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Host-Pathogen Interactions and Human Disease

Part 1: Host-Pathogen Interactions and Human Disease

00:00:04.02Hello. My name is Stan Falkow. I am a professor of Microbiology, Immunology, and Medicine
00:00:10.11at the Stanford University School of Medicine.
00:00:13.29I want to talk to you today about the subject of how we study bacteria --
00:00:22.13bacterial pathogens, in particular (those who cause disease)
00:00:25.02to try to understand more about our own biology.
00:00:28.23The picture you see here is one of
00:00:33.00a macrophage, a phagocytic cell,
00:00:35.01eating bacteria, and it almost looks as if it's sitting there eating a little bowl of peanuts,
00:00:42.02but the bacteria are being taken up, and they're being killed.
00:00:46.25And we often think of host-parasite relationships in that way,
00:00:50.17but actually, likely the first time this happened in evolution,
00:00:55.29the bacteria weren't too happy about it, and they began to evolve ways to resist
00:01:01.05these phagocytic creatures (to them) and they began to become pathogens.
00:01:08.00So, as humans, and most animals,
00:01:13.08we're heir to a veritable sea of different microorganisms.
00:01:17.10You see here a picture of bacteria.
00:01:20.24And these are the smallest living organisms and the most numerous organisms
00:01:24.25that inhabit us. They're simple things.
00:01:28.14You can see that they sometimes have organelles of motility,
00:01:32.06these flagella, these large cables that come out of them.
00:01:34.24But, they're fairly simple.
00:01:36.26They're free living, and they replicate quickly.
00:01:40.17We also have viruses, which are more molecular entities
00:01:44.21that require entry into cells in order to survive,
00:01:49.15and they parasitize the cells, and they replicate, and they end up killing the cell,
00:01:54.18and sometimes we handle this burden successfully,
00:01:57.21and other times we become quite ill from them.
00:02:01.17In many parts of the world, no longer in the United States very often,
00:02:08.08people also have larger parasites.
00:02:12.03You can see here that there is a hookworm, and there are tape worms,
00:02:18.03there's the blood fluke, and there are even protozoa that live in the intestinal tract,
00:02:24.06and these very often are silent, but sometimes they're killers.
00:02:29.24And, most of you sitting there are not thinking that at this moment,
00:02:33.25you may have insects grazing in your eyebrows.
00:02:36.13But, many of you do.
00:02:39.16This little creature loves to be in eyebrows, and is in the hair of many of you.
00:02:46.29And there are other kinds of insects and so on that live in more intimate parts
00:02:52.28as well. All of these go on to make up the normal flora,
00:02:59.00mostly it's microbial cells that make up the flora.
00:03:01.17And it's important to understand that you have 10 times
00:03:05.20more microbial cells than you do human cells.
00:03:08.23And that tends to make us look at the microbial population
00:03:14.11with a little more respect than we did before, I think.
00:03:19.11Most of the microorganisms that make up our flora,
00:03:24.11we have never grown. We only know about them because we can use
00:03:27.28genetic and molecular techniques, but we're learning more and more about them
00:03:32.09every day. And they come in a variety of sizes, shapes --
00:03:36.05some are rods, some are spirals, some are round cocci.
00:03:41.13And, there are literally thousands of these microorganisms
00:03:46.05that inhabit us, and we acquire them virtually from the moment we're born,
00:03:51.21and they remain with us until we die, and then their last function
00:03:58.07is to consume us, as it were.
00:04:00.20So, the organisms that make up our flora are called commensals.
00:04:06.03And commensal means literally we eat from the same plate.
00:04:09.05So, they are part of us, and they share in our nutrition.
00:04:13.15They vary, depending on who we are, and our background,
00:04:19.14and how much stress we're under,
00:04:22.02and what kind of diet we have, but in return they do give us some vitamins,
00:04:26.12and that helps us.
00:04:29.11They also are different in different parts of the body.
00:04:36.13The organisms that you see, for example, in the upper respiratory tract --
00:04:42.21the nose and the mouth --
00:04:43.23are different than those that you see now in the gastrointestinal tract.
00:04:48.05And we can often tell what part of the body organisms come from
00:04:52.20just by their composition.
00:04:54.28One of the important roles that this normal flora plays
00:05:01.07is that it is the first line of defense against the incursion by foreigners.
00:05:06.24And that includes foreign microorganisms.
00:05:08.27It's almost as if they have squatter's rights.
00:05:12.14So, an organism that comes in for the first time really has to be able to establish itself.
00:05:17.02And, it has to establish itself in the face of this mammoth cauldron
00:05:24.17of organisms that are already there.
00:05:26.18
00:05:30.06The difference, then, between a pathogen and a commensal
00:05:34.02is very often that pathogens have this ability to establish themselves
00:05:39.26in a place that commensals can't.
00:05:42.14For example, the liver and the spleen are sterile -- they have no normal flora.
00:05:49.13Pathogens can get through the barrier of the normal flora,
00:05:54.14and cross the epithelial barrier, and actually enter into the bloodstream,
00:05:58.15and go to the liver and spleen.
00:06:00.09So, pathogens have means of overcoming things that ordinarily
00:06:06.09would inhibit normal commensals.
00:06:10.02And pathogens do this because they have an inherent ability
00:06:13.07to cross anatomic barriers or to breach defenses
00:06:17.16that limit the normal flora and our commensals.
00:06:21.15That distinction between pathogens and commensals
00:06:29.20is very often genetic. It's in the genes of the microorganism.
00:06:33.06So, pathogens can have genes that are different than those that are commensals,
00:06:39.28and I'll talk about some of those later on, when we discuss some specific organisms.
00:06:45.09Pathogens and commensals alike share a common landscape,
00:06:51.15and it's the humans.
00:06:54.10Since Adam and Eve, we've had microorganisms.
00:06:57.20The Garden of Eden still had microorganisms, as far as we know.
00:07:00.26And so, for humans to exist, they have to be able to limit
00:07:10.22the microorganisms that they encounter.
00:07:14.12And there are really 3 phases of this.
00:07:16.241 phase, the first phase, is a very quick phase.
00:07:20.08It's automatic. It's something that we inherit,
00:07:25.03and it works at a fundamental level.
00:07:28.03There's another phase, which takes a while, but is induced,
00:07:32.08so that humans have actually evolved that they recognize
00:07:37.01when there has been a microbial incursion.
00:07:40.20And then finally, the final phase is an immune phase,
00:07:44.22which the host begins to make factors, usually
00:07:50.21that will not only limit microorganisms, but actually kill them and clear them.
00:07:56.16Now, the first phase is called the innate immune phase,
00:08:01.27and it includes things like tears.
00:08:06.02The skin, of course, is a barrier. It's like having a little coat of mail that we have around us.
00:08:12.00There is acid in the stomach that we'll talk about later.
00:08:16.11And, there are all kinds of aspects.
00:08:21.01You have little hairs in your respiratory tract that are constantly beating upwards,
00:08:26.06and anything foreign that tries to get through
00:08:30.01your nose and into the lungs is captured in the mucus film
00:08:33.16and actually beaten upwards by the cilia and taken out again.
00:08:38.01We have literally dozens of these kinds of mechanisms
00:08:43.15that have really become part of us. They are part of us.
00:08:46.22The microbes are simple, as I've pointed out before,
00:08:52.12and they really have walls, which have certain kinds of
00:08:56.18proteins and carbohydrates on their surface.
00:08:58.29And there are also aspects... there are those organs that let them swim.
00:09:04.11They are studded with all kinds of different molecules.
00:09:09.09And these molecules that microorganisms have are unique.
00:09:14.25That is, they're not found in anything other than microbes,
00:09:18.29and they're never found in animal cells.
00:09:22.28And so they form the basis of how we detect microbes
00:09:29.10who go beyond the normal barriers that we permit.
00:09:32.22And we have on the surface of our cells
00:09:36.04a number of different receptors. They're called Toll receptors.
00:09:39.26And they are required to be on cells in order for us to have a good innate immune system.
00:09:50.07And they recognize things like the molecules that make up the cell wall of bacteria.
00:09:56.12They recognize the flagella that bacteria have.
00:09:59.18They recognize the kind of nucleic acids that viruses have.
00:10:05.01And whenever they exist, they trigger a response
00:10:09.13that is local and often extreme in one sense
00:10:14.18that we call inflammation
00:10:16.13And the inflammatory response that we have to incursion by microbes
00:10:20.25is part of our normal host defense system.
00:10:23.01So, what happens, as you can see here,
00:10:25.16is that there is a signaling from an organism through one of these Toll factors.
00:10:32.05That, in turn, signals and calls in defenses. It's almost like the bugle call or clarion call
00:10:40.27for defense. And this brings in phagocytic cells --
00:10:44.10the ones that are supposed to eat bacteria.
00:10:47.00And, when this is successful, as you see here,
00:10:50.20the microbes come, and they absolutely have a feast...
00:10:54.21the phagocytic cells have a feast on the microorganisms.
00:10:59.11And, you can see that here. This is actually a picture of macrophages
00:11:03.23eating the plague bacillus, taken in the microscope.
00:11:06.21So, when all things are right, this occurs.
00:11:09.25You have signaling, phagocytic cells come in, and they kill the bacteria.
00:11:15.11The inflammatory response tends to inhibit things.
00:11:18.21In the end, there are also cells which take up the final bits of these bacteria
00:11:25.25and other microbes that have been killed,
00:11:28.02and they process them so that we produce antibodies
00:11:30.29that protect us against subsequent infection.
00:11:33.22And this is called induced adaptive immunity.
00:11:36.23And all of us have these -- normal people have it,
00:11:40.01a perfectly normal immune system and an adaptive immune system,
00:11:42.21and it works extremely well at limiting the incursion of microorganisms.
00:11:47.21We, by and large, are disease-free.
00:11:50.03So, the major point is that we spent an awful lot of our evolution
00:11:56.19in developing ways to stop microbial intrusion.
00:12:01.11And, obviously, it always hasn't been successful.
00:12:05.24And, of course, age makes a difference, too.
00:12:09.03Young people and old people, like me, are much more likely
00:12:12.27to not have working innate and adaptive immune systems.
00:12:18.07So, we are more susceptible to infection.
00:12:20.26But, by and large, normal, healthy adults are quite resistant
00:12:25.29to incursion by infectious agents.
00:12:28.03Now, pathogenicity is a kind of life style.
00:12:33.25And it involves the fact that an organism has to enter a host.
00:12:37.19Once it's in the host, it has to establish itself and persist.
00:12:42.03It has to replicate, and then eventually it has to leave the host and be disseminated.
00:12:48.25And, in each of these cases, we're taking about
00:12:53.01a property of the microorganism that is inherited or special.
00:12:59.03Sometimes, commensals and pathogens have similar characteristics.
00:13:02.08But, very often, the pathogen goes a little step further.
00:13:06.22So, the first thing an organism has to do is to enter.
00:13:13.20And humans have nine portals of entry that serve to permit pathogenic organisms
00:13:21.13to enter, and that's because we need to eat, and we need to breathe,
00:13:26.11and we need to make love to procreate, and each of these provides a portal of entry
00:13:33.03for different microbes. And, you may, I know some of you have probably paused and
00:13:39.15are counting now to try and figure out the 9, and we should do that.
00:13:41.25What you can see is that, they can enter through the conjunctive of the eyes,
00:13:48.05and then ears. If the skin becomes broken, they can
00:13:53.03enter that way or even insects can do that.
00:13:57.19And, they can come in, in any number of places -- the holes, if you will,
00:14:03.00that communicate us with the environment.
00:14:07.17So, once an organism enters, it has to be able to find a unique place to live,
00:14:17.00as it were, a niche.
00:14:19.03And very often, the organisms have, on their surface,
00:14:22.29things that permit them to attach, but often they have to get there first,
00:14:28.27so many organisms are motile, for example.
00:14:31.21Wow! I almost got hit there, by this flagella,
00:14:35.01and you can see, they swim, and it's a marvelous molecular motor
00:14:41.16that goes and lets these creatures swim around in us,
00:14:46.00and they often use that to swim through mucus
00:14:49.13and through other barriers to get to the surface of cells where they want to be.
00:14:55.17They have to stick. And you can see here cells that are sticking
00:15:02.23... bacterial cells that are sticking to epithelial cells.
00:15:05.26And you can see, it's an intimate kind of interaction
00:15:11.08Indeed, it almost appears as if the organism is being caressed by the cell.
00:15:16.20Or, vice versa, if you will.
00:15:20.01So, this is a very close relationship between the microorganism and the host cell.
00:15:26.07The host cell has to have a way to resist this.
00:15:30.26An organism that's a pathogen has to have a way to overcome it, one way or the other.
00:15:36.29And it can do it by secreting things or actually going ahead and trying to
00:15:45.05overcome the host defense mechanisms -- it can avoid it, it can hide,
00:15:50.04it can mimic. For example, some bacteria,
00:15:53.29you see here, are surrounded by this carbohydrate.
00:15:59.21It's called a capsule, and it's in essence,
00:16:03.18the microbe surrounds itself with something for all intents and purposes
00:16:07.05that prevents phagocytes from picking them up.
00:16:11.01And it's almost as if you're trying to pick up a piece of soap in a shower.
00:16:15.02The phagocyte tries to grasp the organism, but because of the capsule, it slips away.
00:16:19.22It can't grasp it.
00:16:21.05So, many organisms have capsules, and indeed, the organisms
00:16:25.11that usually cause pneumonia and meningitis are characterized by the fact
00:16:30.03that they have these slippery capsules that prevent phagocytosis.
00:16:34.06So, that's one way.
00:16:36.15Some organisms actually secrete different kinds of enzymes and toxins
00:16:42.17that allow this organism to spread through the tissue
00:16:47.13or they paralyze the immune functions. And I'm only going to talk about one organism here,
00:16:52.15Streptococcus, the common organism that causes Strep Throat.
00:16:56.13And it secretes a variety of different enzymes that gets rid of DNA,
00:17:02.05it affects the ground substance that you have on cells, the hyaluronidase.
00:17:06.11The hyaluronic acid makes up the extracellular matrix.
00:17:09.24The bacterium dissolves it.
00:17:11.28And, it produces a number of kinds of toxins that will kill cells.
00:17:17.18And these things are molecules that adhere to things like
00:17:22.08epithelial cells and literally punch holes in their membranes.
00:17:26.17And all of this can conspire under the right circumstances,
00:17:30.12so that someone will have an infection -- the Streptococcus goes too far.
00:17:36.13And you see here the classic case of blood poisoning,
00:17:39.09where the Streptococcus has made it through the epithelial barrier,
00:17:42.15entered the lymphatic system, and is now moving through the circulation up,
00:17:47.24and could kill this patient.
00:17:49.24Usually, that's not the outcome, but it's the difference
00:17:52.24between an asymptomatic infection and disease.
00:17:55.27Some organisms literally breach the surface of epithelial cells
00:18:02.29and enter.
00:18:04.27And this is a picture of an organism, Salmonella,
00:18:07.17which causes food poisoning... actually breaching the epithelial barrier
00:18:12.02in the intestinal tract.
00:18:13.21And, when you look at a culture of Salmonella
00:18:18.01that's approaching epithelial cells, you see this .... almost as if the cell is excited.
00:18:23.28And it ruffles because the Salmonella is actually inducing motility in it
00:18:30.01and making the cell reach out and ingest it.
00:18:33.25And you can see how the organism really, in this vicinity,
00:18:35.27can enter the cell.
00:18:37.15And so, why do bacteria and viruses invade cells? And all viruses invade cells.
00:18:45.01And many bacteria do.
00:18:47.09Well, they get a way... the don't have immune surveillance any more,
00:18:52.22so there are no Toll receptors on the surface, although there's some inside.
00:18:57.09It's better food inside.
00:18:59.26It's free from competition of all those normal flora that are outside.
00:19:03.20And sometimes, they use the cells as a way of moving from one place to another.
00:19:08.12They are able to enter cells because they can recognize specific receptors on the cell
00:19:19.09that are normally there, that are there to internalize molecules.
00:19:23.29And the bacteria and viruses have learned how to attach to these
00:19:28.07by having molecules on their own surface that makes basically the cell take them up
00:19:34.04normally, by a normal mechanism.
00:19:38.00So, the microorganisms that are pathogens actually know how to trick
00:19:41.29the host cell into taking them up.
00:19:44.03Now, once they get inside, what are they going to do?
00:19:48.10We, our cells, have been programmed that, when they take up particulate material,
00:19:54.13to put them in a machinery, the endocytic machinery,
00:19:58.25which is designed to break things down and, in fact, in the case of bacteria,
00:20:03.09to kill them. But, different pathogens, whether Salmonella,
00:20:07.22the Tubercle bacillus, or another one,
00:20:11.06the organism that causes Legionnaire's disease,
00:20:13.21each of these has a distinct kind of strategy to enter the cell
00:20:18.19and outwit the endocytic pathway so that they're not killed.
00:20:23.00And indeed, they use this as a new kind of residence where they can replicate
00:20:27.02in the safety of being within the cell
00:20:30.04or sometimes, they actually will break out into the cytoplasm,
00:20:34.03and there's a lecture in this series by Julie Theriot,
00:20:37.06where she describes how organisms break out of vacuoles
00:20:40.26and actually move around inside cells.
00:20:43.17All of these are ways that the organism can get inside,
00:20:50.03persist, and escape immune surveillance and replicate.
00:20:54.28Now, one of the most common ways that microorganisms use to subvert
00:21:00.20the host is to produce poisons. Toxins, that's what they're called.
00:21:06.27Sometimes, bacterial components are poisons in themselves.
00:21:11.17The outer surface... the cell wall of gram negative bacteria
00:21:16.23(one kind of organism, characterized by things like E. coli, the enteric bacteria)
00:21:21.10are actually components that are recognized by the innate immune system
00:21:26.18and trigger inflammation.
00:21:29.24The molecule that does that is called lipopolysaccharide, or LPS.
00:21:34.22And it has a moiety on its surface, which is called Lipid A,
00:21:40.01which is really the toxic part.
00:21:43.28And, when this is recognized by the innate immune system,
00:21:49.20as I indicated to you earlier, there's an inflammatory response.
00:21:52.24If these microbes get into the bloodstream,
00:21:55.26sometimes this inflammatory response goes too far.
00:21:59.23And what happens then, as a result of this Toll-like inflammation,
00:22:06.01is that you end up with things like meningitis,
00:22:10.14and this is a picture from an unfortunate infant
00:22:13.18in the pediatric intensive care unit at Stanford,
00:22:17.18who has meningococcal meningitis.
00:22:21.12And, the presence of this endotoxin in her bloodstream
00:22:26.06has literally caused intravascular coagulation and a loss of blood supply.
00:22:31.23And, very often, unfortunately, children who have this will lose their limbs,
00:22:37.01and it's because the host has responded to a normal component of a microbial cell
00:22:43.29in too exuberant a way.
00:22:47.18Some toxins affect different parts of our cell biology.
00:22:55.22This is another toxin... this is botulism in an infant.
00:22:58.15And this is called the Floppy Baby syndrome
00:23:01.10because botulism toxin has an effect where, basically, the muscles become flaccid.
00:23:08.02Bacterial toxins are among the most potent poisons that are known.
00:23:13.20From a biological standpoint, they're favorite tools of cell biologists
00:23:19.03because they're extraordinary in their variety and their mode of action.
00:23:22.14For example, there are those that go to the surface of the cell,
00:23:27.09and they punch holes, and the cell basically bursts open.
00:23:31.16There are some, for example, that affect the cytoskeleton of the cell,
00:23:36.24and they make the cell traffic the uncanny organisms around.
00:23:42.11The bacteria can motor around.
00:23:46.02There are those that paralyze the signal transduction,
00:23:49.01so that the cell doesn't know how to signal that it's been invaded
00:23:52.02and tell the immune system, "Come rescue me!"
00:23:54.08And there are all aspects of the normal cell biology
00:23:59.23that we have that are detected and utilized, if you will,
00:24:07.03by the microorganism for its own purposes.
00:24:10.17So, pathogenic bacteria, and other microorganisms
00:24:14.05interfere and manipulate, for their own benefit, the normal functions
00:24:18.29of host cells, and they do so in a variety of ways.
00:24:23.01The whole issue for a microorganism
00:24:30.12is replication. Every microbe sitting in its mother's flagellum
00:24:35.28learns that the first thing that it must learn to do
00:24:39.07is to replicate.
00:24:40.22And so, when you watch microbes replicate, they do so by simple binary fission.
00:24:46.10And you can see that you simply become surrounded by them over a period of time.
00:24:51.14Now, watching this and knowing that this doubling occurs every 20 minutes,
00:24:57.27and if it went on freely, a single microorganism would literally grow to something
00:25:03.01that was about 23 times the volume of the Earth,
00:25:05.18if it actually was permitted to go unfettered.
00:25:08.15That of course, doesn't happen. But it gives you some idea of why a surgeon
00:25:13.27fears even a single microorganism falling into a surgical field.
00:25:18.13And why your mother told you to always clean out a wound.
00:25:23.02You don't want these dangerous kind of things in you.
00:25:25.22But this is what microorganisms do.
00:25:27.25They have to replicate.
00:25:29.19So, the whole thing, from entry and all the steps that it has to go through
00:25:33.26has this one function in mind: replication.
00:25:37.12Make more of yourself.
00:25:39.15And the reason that organisms make more of themselves,
00:25:41.21it's either to persist or it's to go to a new host.
00:25:46.24So, sooner or later, if you're a microorganism,
00:25:50.16the host is going to die.
00:25:52.26And, it's got to find a new susceptible host.
00:25:56.28And organisms very often will induce their exit from the host in a variety of ways.
00:26:03.11So, here is a sneeze
00:26:05.15that you can see in slow motion.
00:26:08.26And all of these little droplets carry a multitude of different organisms.
00:26:13.22But, there are also normal features. The gastrointestinal tract
00:26:17.13is the single largest source of microorganisms in our body.
00:26:24.00It is often the way in which microbes are transmitted
00:26:28.04from person to person, because everybody poops.
00:26:32.06And, organisms recognize this, and therefore utilize this
00:26:37.18as a means. And that's just not as trivial as it sounds.
00:26:41.02Because the organism, having lived inside the host,
00:26:45.03and been comforted in the warmth of the host and the warmth of cells
00:26:48.23now goes into the cold, cruel world, and has to be able to survive there long enough
00:26:53.22to be taken up by another susceptible host.
00:26:57.04So, it's a cycle that has to persist.
00:27:01.14Now, I've told you about each of the steps: entry, attachment, and persistence,
00:27:09.10outwitting the host defenses, replicating once it's outwitted them,
00:27:15.17and begin passed on. But organisms, in order to do this, have to have other means.
00:27:20.13So, they have to understand where they are,
00:27:24.05and they use molecular ways to do this.
00:27:25.10The surface of a microorganism is very simple.
00:27:28.03On the other hand, it can recognize things like the pH, the temperature,
00:27:32.18the amount of oxygen, and it knows where it is
00:27:36.23by that, and it turns on and turns off particular functions depending on that.
00:27:42.22The other thing to keep in mind is that microorganisms, and particularly pathogens,
00:27:49.26respond to a host's biological and social behavior.
00:27:54.00So, microorganisms are opportunists in one sense.
00:27:57.23Let me tell you about them.
00:27:59.11There are many diseases that I consider diseases of human progress.
00:28:04.03And, they actually constituted some of the more important medical crises in history:
00:28:13.13Legionnaire's disease, toxic shock syndrome, of course HIV/AIDS,
00:28:16.16Lyme disease, and more recently E. Coli hemorrhagic fever, and most recently bird flu.
00:28:22.14These are all things that are involved where the humans
00:28:26.07and their behavior played a major role in this.
00:28:29.24Let me tell you about Legionnaire's disease.
00:28:31.13When Legionnaire's disease first came out,
00:28:32.29it was considered by many to be a massive hoax.
00:28:36.07No one understood how a group of veterans meeting in 1976
00:28:42.19could have suddenly this new disease and they thought it was the result
00:28:49.24of a variety of conspiracies and what have you.
00:28:53.19And some people just thought it didn't exist... it was just made up.
00:28:57.00Now, actually, the organism that causes Legionnaire's disease
00:29:01.26is called Legionella pneumophila.
00:29:04.07And Legionella we now know actually likes to live in fresh water
00:29:09.09and grow in protozoa.
00:29:12.12That's where it's been for millennia.
00:29:14.22So, it grows inside of amoeba, it replicates there, it makes lots of different numbers.
00:29:24.06And it makes new numbers, it kills the amoeba,
00:29:26.19bursts out, goes looking for another amoeba.
00:29:28.26That's what it really does in nature.
00:29:31.13But, we've changed over time.
00:29:34.13We now take showers. We didn't 50 years ago.
00:29:38.28Anyone going to a supermarket watches what happens
00:29:43.05when the vegetables are being sprayed.
00:29:45.17We have aerosolized everything around us.
00:29:49.12And, by aerosolizing, we have put Legionella in small droplets,
00:29:54.08to now be more available than it ever was before.
00:30:00.06And we're older than we were before.
00:30:01.27So, Legionella found its way into the respiratory tract
00:30:08.19more and more frequently, and a human alveolar macrophage
00:30:14.20looks pretty good, as compared to an amoeba.
00:30:17.14They actually are probably related in some way... in the past.
00:30:22.26And therefore, this organism that usually lived in freshwater protozoa
00:30:26.23is now getting breathed into lungs, it's going into the alveoli
00:30:32.09and being eaten by macrophages, and in the right host, under the right circumstances,
00:30:38.13it replicates and causes pneumonia.
00:30:40.18
00:30:43.10There are other things... toxic shock syndrome was an issue
00:30:46.17in which, women were changing.
00:30:50.03And they demanded products that were different.
00:30:53.02And, companies responded by coming out with new kinds of tampons,
00:30:57.27for example, that gave women more freedom.
00:31:02.12They didn't require changing as often.
00:31:04.14They were made of new kinds of chemical compounds.
00:31:07.00This turned out to be an opportunity for Staphylococci
00:31:12.04that colonize the vagina in some women.
00:31:15.13And this new opportunity for the organism to replicate,
00:31:20.02because that's what they want to do,
00:31:21.21ended up causing a disease that had not been seen before
00:31:25.10and considerable human misery.
00:31:27.19The tampons were taken off the market, and the disease disappeared.
00:31:31.17If we now look at more recent history,
00:31:36.26we find out that we are really still witnessing a human-microbial work in progress.
00:31:44.21There have been all kinds of new diseases that have emerged all over
00:31:48.23the world, and we've had SARS, we have hemorrhagic E. coli.
00:31:52.17We have more food poisoning than we did 50 years ago
00:31:56.13because our methods of distributing food have changed over that period of time.
00:32:00.25All of these things are changes in our behavior and our culture,
00:32:05.19and these are things that microorganisms use to their advantage,
00:32:10.26always with the idea to find new ways to replicate and become disseminated.
00:32:16.18So, organisms that are pathogens
00:32:23.06evolve, and they share the experience.
00:32:24.25So, microorganisms, many of you may know, have different ways of sharing information,
00:32:30.20either by using DNA molecules, by actually having cell to cell contact
00:32:37.07a kind of fundamental or simple conjugation or sex that occurs
00:32:43.27where genes flow from one organism, the donor, to another, the recipient,
00:32:47.19and sometimes viruses are used to transfer genes.
00:32:53.10And, what we now understand is that often a commensal can become a pathogen
00:33:00.07because pathogenicity sometimes involves in genetic quantum jumps.
00:33:04.26And we recognize now that often there are blocks of genes
00:33:08.26that are transferred horizontally, from one organism to another,
00:33:13.08which in entering an organism, become part of its genetic characteristic -- an island.
00:33:20.07And they come in different kinds of forms.
00:33:25.05Bacterial specialization, by and large,
00:33:28.01is the result of the inheritance of blocks of different genes,
00:33:32.11and, in the case, of pathogenicity, they're called pathogenicity islands.
00:33:36.06And so, we now recognize the difference between some commensals
00:33:41.04and some pathogens is the fact that they've inherited blocks of genes.
00:33:45.17So, for example, many of you may know that E. coli
00:33:50.01is a common member of our normal flora.
00:33:52.18On the other hand, E. coli is the most common cause of urinary tract infections.
00:33:58.18The difference between an E. coli that causes urinary tract infection
00:34:02.24and an E. coli that inhabits the bowel
00:34:05.09is because the E. coli which is a urinary tract specialist
00:34:11.02has inherited a number of different blocks of genes...
00:34:15.10different pathogenicity islands.
00:34:17.24And it permits it to encode specialized structures that permit it to attach
00:34:23.21to the bladder or to the kidney and to establish itself there.
00:34:28.12And so, that's the difference between a pathogenic E. coli
00:34:32.01and a commensal E. coli.
00:34:34.07It is important to keep in mind that disease, which we focus on,
00:34:41.22need not be the outcome of the host-parasite interaction.
00:34:45.28In fact, it's usually not the outcome.
00:34:48.02And very often, we're talking about an instance in which we have what is called
00:34:55.03the iceberg concept of infectious diseases, in which
00:34:58.23people who actually have infection are in a small number,
00:35:04.18relative to the total number of people who are infected.
00:35:07.11So, it's like an iceberg -- only a small amount is on the surface.
00:35:10.26Those are the people who are ill.
00:35:12.11Most of the people who encounter organisms escape without any knowledge.
00:35:19.29And different parasites are different ways.
00:35:22.25So, polio, we think of as being a terrible disease,
00:35:26.19but actually the relative number of people who become clinically ill
00:35:30.29who have poliovirus are few.
00:35:33.09On the other hand, if you look at measles,
00:35:37.00and so on, you end up with infections in which everyone may be infected,
00:35:44.21but only 50% actually show signs of illness, and there are some diseases, like rabies,
00:35:49.19where everyone who gets infected, as far as we know, will sicken and die.
00:35:55.14The most common organisms that cause disease in humans,
00:36:02.00among them, Mycobacterium tuberculosis, which in the developing world
00:36:06.11probably infects a very high proportion of people.
00:36:11.0190% of the people who are infected with the Tubercle bacillus
00:36:15.10are asymptomatic. They are infected by the organism,
00:36:18.29they carry the organism with them, to their grave,
00:36:21.27but they never show symptoms.
00:36:24.21The organism that causes typhoid fever, 80% of the people who acquire this
00:36:30.04never show signs of illness. We know they've had it
00:36:34.05because we find antibodies in their blood that indicate that they had it.
00:36:37.11I'll tell you in a while about an organism, Helicobacter pylori,
00:36:41.11which infects most of the world's population -- at least in the developing world --
00:36:48.02yet about 80% of the people never show any signs or symptoms.
00:36:53.28So, disease is the exception, rather than the rule.
00:36:56.26Pathogenicity is a reflection of an ongoing evolution
00:37:03.09between a parasite and a particular host.
00:37:06.09If we understand this, and how the organism establishes itself,
00:37:15.00overcomes our defenses, we learn a great deal about the pathogen --
00:37:20.15perhaps how to treat it and how to prevent it from infecting by making vaccines --
00:37:26.00but in the process, we also learn about ourselves.
00:37:30.04And that is one of the great joys of working with these pathogens
00:37:35.09because you hope that you can help cure things,
00:37:38.27but you also are in a place where you can discover new things.

Part 2: Helicobacter pylori and Gastric Cancer

00:00:02.16Hello, my name is Stan Falkow.
00:00:04.28I'm a professor of Microbiology and Immunology and Medicine
00:00:09.08at Stanford University School of Medicine.
00:00:11.12I wanted to talk with you today about host-pathogen interactions
00:00:18.13and human disease and how we learn about human biology
00:00:24.03from the studies of microorganisms that have studied us.
00:00:29.09This is a picture that you see of a macrophage eating bacteria
00:00:36.04as a kind of symbol of the host-pathogen interaction,
00:00:41.10although it's rather one-sided, and I think you'll see, before the end
00:00:46.02that it works both way.
00:00:48.21So, I will begin by telling you that I'm going to talk about one microorganism,
00:00:55.21Helicobacter pylori, and its relationship to gastric cancer.
00:01:02.08This study, we think, has helped us understand human biology
00:01:11.16by the study of how this organism establishes a persistent bacterial infection in humans.
00:01:19.06Twenty years ago, we thought that ulcers were caused by stress.
00:01:28.07And you can see for yourself the list of things that are supposed to be least stressful
00:01:32.03versus most stressful, and I don't know where you put yourself on that list,
00:01:37.13but 20 years ago, when people had ulcer disease
00:01:40.23and gastritis (dyspepsias they call it),
00:01:44.08we treated them with Alka-Seltzer and all kinds of antacids.
00:01:49.02And some people ended up being on the psychiatrist's couch,
00:01:54.16trying to reduce their stress.
00:01:56.02Not everybody believed that it was a stress-related disease.
00:02:02.06There were 2 scientists in Australia: Barry Marshall and Rob Warren
00:02:07.23who did not believe that.
00:02:10.00Barry Marshall, at the time, was a gastroenterologist
00:02:14.07and he had studied with a microbiologist in Australia
00:02:18.09who had told him that there were bacteria that you could find
00:02:21.26in the stomachs of animals, and Barry thought that he saw
00:02:28.17those very same organisms or kind of organisms
00:02:31.10in the stomachs of humans, but he made the association that
00:02:35.13he only saw it in the stomachs of people who had gastritis and ulcer disease.
00:02:39.24Rob Warren, who he worked with in Perth,
00:02:43.04was a pathologist who concurred with this idea.
00:02:45.27Barry tried very hard to be able to grow these organisms he could see
00:02:53.00in culture, and he actually failed.
00:02:55.21And, he was so frustrated that he took a holiday and went to a place south of Perth,
00:03:02.06to do a little relaxation, and he forgot the Petri dishes
00:03:07.01that he had streaked with patients' material
00:03:09.00on the bench. And when he came back after several weeks, lo and behold,
00:03:13.01there was colonies of bacteria growing
00:03:16.12on the Petri dish.
00:03:18.05So, he took some of these and put them in the microscope,
00:03:21.12and they looked like the same bacteria that he could see in the stomachs of people.
00:03:26.17So, at that point, Marshall and Warren were wondering
00:03:32.26what they could do to establish the fact that the organisms that they had seen in the stomach
00:03:38.13were actually the cause of ulcers and dyspepsia.
00:03:44.04So, as Barry tells the story, he convinced Rob Warren to drink some of this culture
00:03:50.12of this organism that he had grown,
00:03:52.08and, in fact, poor Rob came down with gastritis and ulcer disease,
00:03:57.06and this is a picture of the biopsy that came from Rob's stomach,
00:04:00.25showing that, in fact, these organisms were alive and well in his stomach,
00:04:05.01and Barry, to his great credit, had also drank the culture. He also got ill.
00:04:09.24But not as ill as poor Rob did.
00:04:12.27So, it's nice to have a friend in high places.
00:04:15.17Now, as many of you will know, particularly some of you young scientists watching
00:04:19.27scientists like to talk about their work.
00:04:22.28But, you also probably know that not everybody wants to listen!
00:04:26.18And so, Rob and Barry submitted a paper describing their results
00:04:32.04to a learned society in Australia,
00:04:36.11and they got a letter back saying that they were sorry that their paper
00:04:42.09wasn't accepted. This says, if you can't read it,
00:04:47.20that it wasn't accepted, but they noted that the number of abstracts they received
00:04:51.29increased, and 67 were submitted, and they were only able to accept 56, so
00:04:59.10that was supposed to be something that would relieve them of their anxiety
00:05:04.24of being refused to this thing.
00:05:06.19However, in the end, they were right,
00:05:12.00so Barry Marshall and Rob Warren in 2005 received the Nobel Prize in Physiology and Medicine
00:05:18.18for the discovery that the bacterium that they found in the stomachs,
00:05:22.28which they called Helicobacter pylori,
00:05:26.17played a role in gastritic and peptic ulcer disease.
00:05:29.15And, it all worked out well in the end for them,
00:05:32.22as you can see.
00:05:34.15So, the organism Helicobacter pylori that they discovered, not that many years ago,
00:05:40.21is quite remarkable.
00:05:42.09It is a spiral organism, and it has flagella attached to it that makes it motile.
00:05:51.05And, it is transmitted, we now know, by the fecal-oral route or the oral-oral route.
00:06:00.00Helicobacter has been with humans since the very beginning.
00:06:06.22And we actually have molecular data now that indicates
00:06:10.28that at the beginning of what we consider
00:06:15.14mankind, that there was a single source in Eastern Africa that moved to the south
00:06:23.22to South Africa, one went to West Africa,
00:06:25.27but the major source went out and literally, with humans, populated the world.
00:06:30.20And that went all the way over here to the Bering Strait,
00:06:34.04and eventually came across here, into the United States.
00:06:38.23And you can see, it's been there for a very long period of time.
00:06:42.11So, Helicobacter and humans have been together from the beginning.
00:06:47.13We now understand that Helicobacter pylori really colonizes the majority of people
00:06:58.06in the world, or it did.
00:07:00.24And in the developing world, one still sees that about 90% of the people
00:07:05.09carry Helicobacter pylori. Now, in more technologically advanced countries
00:07:10.22like Italy, you get a different kind of pattern now, when you look,
00:07:16.09and you can see that it appears to increase over time and age.
00:07:20.10And originally, this was thought to mean that the likelihood of acquiring Helicobacter
00:07:25.24was greater the older you got,
00:07:28.11but actually, it's not. It's an age cohort effect.
00:07:32.00And so, people who are older were infected with Helicobacter
00:07:36.25when they were young and still carried it.
00:07:39.08But now, people who are really young no longer acquire Helicobacter quite so often,
00:07:47.24so the incidence is much lower.
00:07:49.19If you look at something like Mexico,
00:07:52.01which is in between, which is this line,
00:07:54.23you can see that it's beginning to show signs of this cohort effect.
00:07:58.21You're less likely to have it earlier in life than you are in Ethiopia.
00:08:04.25So, Helicobacter prevalence is still great in many parts of the world...
00:08:10.29the developing world, and it's becoming less and less common now
00:08:14.14in more technologically advanced countries.
00:08:18.05I'll talk about that later on because it has some significance.
00:08:22.00Helicobacter pylori colonizes the mucus layer of the human stomach,
00:08:28.25and I should point out that Helicobacter pylori is only found in humans.
00:08:32.28There are Helicobacters found in many different animals,
00:08:36.21but pylori is human specific.
00:08:39.12Now, just to remind you or to inform you about the stomach,
00:08:44.18the stomach is a glandular organ that is lined with epithelial cells,
00:08:52.06and it has a considerable amount of muscle mass.
00:08:55.00If you look at it, the upper part has a surface epithelium, and these
00:09:00.24epithelial cells secrete mucus.
00:09:03.09And then there are also cells -- the parietal cells --
00:09:08.01which are down further in the gland which secrete acid,
00:09:11.25of course, which the stomach is known for.
00:09:15.13The ability to secrete mucus and make acid
00:09:20.27are two distinct kinds of cells found in the stomach,
00:09:24.14and actually, there's a mid-zone where there are stem cells which make both kinds...
00:09:29.14which are actually the progenitors for both kinds of cells.
00:09:32.15So, it's a fairly simple kind of organ, as it were.
00:09:37.06It's constantly producing epithelial cells that are shed at its surface,
00:09:40.08and it has cells further on down in the gland that secrete acid and also hormones, like gastrin.
00:09:48.00Now, the stomach is a pretty drastic place to live
00:09:53.04if you're a microorganism. It's an acid environment
00:09:57.06and rich as you know in hydrochloric acid.
00:09:59.26However, the stomach cells themselves -- the epithelia --
00:10:04.25are protected because the secretion of mucus by the epithelial cells
00:10:09.18gives an overlying gel of protection, if you will,
00:10:13.11and so the pH really close to the surface of cells
00:10:17.10is closer to neutral pH. It's only out in the middle of the stomach
00:10:22.10where you really see the high amount of acid
00:10:25.06and, in fact, Helicobacter lives in the mucus gel
00:10:31.00very close to the surface of the epithelium.
00:10:34.05It's an organism, then, that lives in the stomach. It lives very close to the epithelium.
00:10:41.22And, it it has been associated with a number of diseases.
00:10:46.21So, Helicobacter pylori and its presence
00:10:49.10has been associated with a variety of diseases.
00:10:51.27However, it's important to understand at the outset
00:10:57.01that the vast majority of people who are infected with Helicobacter pylori
00:11:00.23are infected when they're young, they're infected for life,
00:11:04.07and about 3/4 of these people or more have no symptoms whatsoever
00:11:09.29in their whole lifetime. They would never know they had Helicobacter
00:11:12.22unless somebody either cultured them or did another kind of test.
00:11:17.02A subset of people who have Helicobacter pylori
00:11:22.01actually develop what is called gastritis.
00:11:24.23Gastritis is really an inflammatory response that is relatively severe,
00:11:32.03and there is destruction, actually, of the glandular substance
00:11:35.16of the stomach. Some of these people go on to develop ulcer disease.
00:11:42.07They either have peptic ulcer or duodenal ulcer.
00:11:45.03So, here you see an endoscopic view of a normal stomach
00:11:50.23and someone who has Helicobacter pylori gastritis.
00:11:55.08And, depending on the degree of gastritis, there may or may not be symptoms.
00:12:00.00However, in people who have ulcers,
00:12:04.22you can see that there is really erosion of the gastric mucosa,
00:12:11.12and you actually have a severe lesion,
00:12:14.03and this can be severe enough so that you actually have perforation of the stomach
00:12:18.19and you have serious side effects.
00:12:21.16And, of course, you have a great deal of pain and discomfort
00:12:24.03because you literally have a hole in your stomach.
00:12:27.12And this is because the inflammatory effects of Helicobacter pylori
00:12:31.22have been severe enough that there has been destruction of the gland
00:12:35.17and there is no longer the same protection that one had seen before
00:12:39.24from acid, and also because there's been a change in the epithelium
00:12:43.29because of the constant irritation due to the inflammation.
00:12:47.20In a smaller group of people, about 1%,
00:12:56.21they not only go on to have atrophic gastritis,
00:13:01.16they may or may not have ulcer disease, but a subset of these people
00:13:04.16will actually develop frank cancer.
00:13:07.17And so, gastric cancer is the result of having had a Helicobacter pylori
00:13:14.18infection in many, in fact most, cases.
00:13:18.10Now, the association with Helicobacter pylori and cancer
00:13:22.01is the same as one sees for the risk of having smoking and lung cancer.
00:13:29.26So, it's a very high risk. If you have Helicobacter pylori,
00:13:32.25you have a reasonable chance of developing gastric cancer.
00:13:36.25And gastric cancer, over a century ago, was the leading cause of cancer in humans.
00:13:43.06It's been surpassed now by other things.
00:13:47.11As, again, we'll discuss in a little bit.
00:13:50.01But, the fact is, it's a very high correlation. And 1% sounds like it's low,
00:13:57.04but when you think, at one point, the entire population of the world
00:14:01.12had Helicobacter pylori that meant that 1% of the people in the world
00:14:05.27were doomed to die of gastric cancer.
00:14:08.18Not a good thing.
00:14:09.28Helicobacter is so good at what it does that
00:14:15.12the World Health Organization has now classified it as a Type 1 carcinogen.
00:14:21.02No other microorganism has that degree of fame.
00:14:25.27And finally, just to remind you again, even today
00:14:30.14when there has been declining prevalence of Helicobacter pylori,
00:14:35.10one can still say that 50% of the world has been exposed to this organism
00:14:40.22since childhood, and that, of these individuals,
00:14:45.01at least 1% or more will develop gastric cancer over time.
00:14:49.10So, how does the organism do this?
00:14:51.16How does it establish itself in the stomach, and how does it cause disease in some people?
00:14:57.19Well, Helicobacter makes the most potent urease that's known.
00:15:05.15And, the urease is set up in a way that it actually makes sure that the cytoplasm
00:15:11.19of the microbe always remains neutral.
00:15:13.29So, if Helicobacter gets too close to the acidic environment,
00:15:17.26or at that period of time when it has to be in...
00:15:22.10When it first comes into a host, it has to swim through that highly acid environment
00:15:27.06to reach the mucus gel.
00:15:29.04It utilizes this. So this is a very powerful enzyme that it uses.
00:15:34.02Without urease, the organism is not virulent for humans any longer.
00:15:39.05Now, it's motile. And so, Helicobacter, I showed you, has flagella, and it swims along,
00:15:48.07and it's a little corkscrew-shaped organism
00:15:50.23perfect for swimming through a mucus gel.
00:15:53.29And, it uses this motility to swim to the surface of cells and stick,
00:16:01.22and you can see bacterium just coming there and sticking
00:16:05.17to the surface of the cell, swimming through.
00:16:08.09Helicobacter also has, on its surface, proteins and other molecules
00:16:16.01that permit it to stick to the surface of gastric epithelial cells.
00:16:22.00And, the best known of these is, in fact, a protein found on the bacterium
00:16:27.07that binds to a known blood-group antigen that's found on the gastric epithelium.
00:16:32.16And this is thought to be the primary way that Helicobacter can stick to the surface of cells.
00:16:38.23But there are a number of other kinds of adhesins that have been described.
00:16:44.02When you examine an infected stomach, you find that some of the Helicobacter
00:16:50.05actually are swimming around in the lumen, and only
00:16:54.02about 30% or so of the bacteria are actually attached to the surface of a cell.
00:16:59.21So, you can think of it as a population in which you have organisms
00:17:04.18that are constantly in the mucus layer, swimming around and replicating.
00:17:09.11And then a proportion of those will stick to the surface of the cell,
00:17:13.20and it's widely believed by people in the field that once the organism sticks to the cell,
00:17:18.03it will stay there until it dies or it replicates.
00:17:23.05And, here's a scanning electron micrograph,
00:17:31.12and you can see the bacteria sitting on the top of the cells.
00:17:31.27And so, this attachment turns out to be a critical point in Helicobacter pylori pathogenesis.
00:17:40.12Now Helicobacter also secretes a molecule which is called Vacuolating Cytotoxin A.
00:17:47.13VacA kind of looks like a flower, if you can see the picture of the molecule here.
00:17:53.11It looks like a flower, but it attaches to the surface of the cell,
00:17:57.13it's taken into the cell, and it has profound effects. And you can see
00:18:02.04in this video, that the cells in fact get full of these vacuoles
00:18:06.03so that normal trafficking that goes on inside those cells is affected
00:18:11.24and you have an accumulation of these vacuoles,
00:18:14.12and you can also see that the net result is
00:18:17.20that the cells die, and you see a cell here that's undergoing cell death.
00:18:21.16So, VacA is a fairly potent kind of poison
00:18:25.20that exists that Helicobacter makes.
00:18:28.23But, the most important virulence determinant that's been described so far
00:18:34.12is a protein that's called CagA, and it was initially described
00:18:39.29as Cancer-associated protein A.
00:18:43.15And, this was done because antibodies were found
00:18:47.29in the serum of patients who had Helicobacter
00:18:50.18that recognized this particular protein on the surface of the bacterium.
00:18:54.18And, this protein was on some strains and not other strains of bacteria isolated from humans.
00:19:01.16So, the Helicobacter that came from patients who had gastritis
00:19:06.24and ulcers were much more likely to have this protein, called CagA,
00:19:11.07than those that did not.
00:19:13.12And, people who had ulcers and cancer were associated with CagA
00:19:18.04so they talked about CagA+ strains and CagA- strains.
00:19:21.08And CagA+ strains were the ones that were the most likely to be associated with disease.
00:19:27.22No one understood why for a while.
00:19:29.18However, with the onset of genomics and genetics,
00:19:34.14it's now clear why some organisms have CagA and some don't.
00:19:39.07And it turns out CagA is a protein that is synthesized only by certain bacteria,
00:19:44.22and they only synthesize it because they have an insertion
00:19:48.09of DNA in their chromosome, which is missing from those that are CagA-.
00:19:55.05Now, these genes that are inserted are a group,
00:20:00.05and they include, at one end, the actual structural protein,
00:20:06.09the encoding capacity, to encode for CagA protein.
00:20:09.26So, CagA is actually encoded as part of this island.
00:20:13.26And there are other genes here, that you see around.
00:20:17.16And, what has now been understood from, not only the genomic sequence,
00:20:25.01but also by doing a variety of studies is that the actual pathogenicity island
00:20:31.04is enough to encode for a needle-like structure.
00:20:36.09And, through this needle-like structure, the bacterium makes contact
00:20:45.23with the membrane of the host cell.
00:20:49.04And it actually secretes the CagA protein from the bacterium,
00:20:53.26through the needle, into the cytoplasm of the host cell.
00:20:58.29So, in essence, the pathogenicity island encodes for a kind of hypodermic syringe --
00:21:06.07a molecular syringe --
00:21:07.20that injects a protein from the bacterium into the host cell.
00:21:11.02And you can see a picture here of the bacterium in contact with
00:21:15.14the cell, and you can see, I think, the little spikes that come out
00:21:19.01that are this protein bridge between the organism and the host.
00:21:24.20Now, we now understand some of the details of this.
00:21:29.21The organism attaches to the surface.
00:21:33.12It injects CagA into the host cell.
00:21:38.20So, the bacterial protein is put inside the host cell,
00:21:41.25and then, remarkably, a host cell kinase phosphorylates tyrosine residues
00:21:49.20found on the bacterial protein.
00:21:51.24So, the host cell takes a bacterial protein, and puts phosphates on a tyrosine group,
00:21:57.17and that activated CagA molecule, with a phosphorylated tyrosine,
00:22:05.06will now go and bind and affect host cell cellular phosphatases,
00:22:12.19and actually it will also stimulate a kind of gross cell response
00:22:18.20by host cells.
00:22:22.01The other parts of the surface of the bacterium
00:22:25.17also go on, are taken up, and perhaps injected through the secretory apparatus
00:22:31.29to turn on the inflammatory regulatory pathways of the cell, NFKB.
00:22:40.06Now, this growth factor effect is something you can see in culture,
00:22:45.04so you see here, now, a cell, that's a CagA- bacterium
00:22:49.23that's been added to this culture of tissue culture cells,
00:22:54.09and you can see that the cells jiggle around,
00:22:56.28but nothing much happens. That's pretty normal movement
00:23:00.13for a host cell under any circumstances.
00:23:04.13However, the cells that have been infected... the same kind of cells infected
00:23:10.17by a CagA+ strain, you can see change shape, they elongate,
00:23:15.25and they look as if they're moving.
00:23:17.16So, CagA has a profound impact on the host cell
00:23:23.04and leads to this effect.
00:23:24.26Now, my laboratory, among others, wanted to understand what the function of CagA was.
00:23:31.28And, we used a kind of research tool which is called DNA microarray analysis
00:23:41.05in order to find out.
00:23:42.25So, we have on a plate, we have basically a representation
00:23:46.21of all the known genes of the human.
00:23:53.08Karen Guillemin, who was a student in my lab... she now has a laboratory of her own in Oregon.
00:24:00.07Karen went ahead and she took two sets of tissue culture.
00:24:08.11One she infected with Helicobacter pylori, both CagA+ and CagA-.
00:24:18.18And she then compared this to the messages that she extracted from
00:24:26.02uninfected gastric epithelial cells.
00:24:28.27So, the idea is that you have the transcripts, that is the gene message,
00:24:35.20from an uninfected epithelial cell, you have the gene messages
00:24:40.10from an epithelial cell that's been infected with a CagA+ strain,
00:24:45.14and you have messages from an epithelial cell infected with a CagA- strain.
00:24:52.05And she takes the RNAs and she does an analysis,
00:24:56.17and the idea is to find out what messages are different
00:25:02.01from uninfected cells, versus infected cells,
00:25:04.13and is there a difference between CagA+ and CagA- bacteria?
00:25:08.27And, there were a number of clear differences.
00:25:13.02Some genes were turned on by infection by wildtype CagA+ strains
00:25:17.23as compared to those that were not carrying a CagA.
00:25:25.12When she looked at this, and this is the output of this kind of an experiment,
00:25:30.12And simply said, red means that genes are upregulated
00:25:35.23green means that they're downregulated compared to uninfected cells.
00:25:39.16And the way you try to look at these is like looking at a piece of modern art.
00:25:44.27You kind of squint and look for a pattern.
00:25:46.21And what you can see is that the wild-type, the strain that's CagA+,
00:25:52.12you see this group of red genes... that means they're genes that are turned on
00:25:56.17in the presence of CagA, as compared to the uninfected.
00:26:01.09And you can also see that the genes are not turned on if the cell's infected with a CagA- strain.
00:26:09.18So, this little block of genes here, actually is a signature for what happens
00:26:17.19to a host cell infected with CagA.
00:26:20.13And, when this was examined in some detail, there was a clear answer.
00:26:25.13And that is that the CagA-specific genes were associated with the tight junctions
00:26:31.25of epithelial cells.
00:26:34.20So, the question then came up from this one experiment.
00:26:38.03All good experiments, you ask one question, you get an answer,
00:26:42.26and that leads to another question.
00:26:44.06So, the question was, does Helicobacter pylori somehow interact
00:26:50.01with the tight junction of gastric epithelial cells?
00:26:52.09And, to answer this question, Manuel Amieva, who was a pediatrician
00:26:58.05with an MD-PhD looked at this.
00:27:02.02And, he looked at this microscopically, and you can see
00:27:07.02that the bacterium has stuck to the surface. This is the tight junction.
00:27:11.14And the question was does this really ... is this really a biological effect?
00:27:18.14Now, the tight junction of epithelial cells is a fairly complicated
00:27:23.29and multi-functional group of elements,
00:27:27.03and there are some things that basically hold cells together,
00:27:31.01and there are other things that communicate from cell to cell.
00:27:34.11And, the tight junction is associated with, obviously, barrier --
00:27:40.27it keeps things out and things in.
00:27:44.25It's involved with polarity, because many of you will know epithelial cells
00:27:48.19have a top and a bottom, an apical and basolateral aspect.
00:27:52.22And, the cell morphology, the cell movement, cell division, cell differentiation...
00:27:57.16the tight junction is involved in all of these functions.
00:28:00.29So, you can see here that some tight junctions bar movement of material into the cell.
00:28:09.21Some, make a meshwork, almost like a coat of mail on the surface.
00:28:13.28And others are involved in gluing cells together,
00:28:17.10and some are involved in talking, one cell to another.
00:28:21.09And this is important, of course, in division.
00:28:23.29So, it's a complicated group of proteins.
00:28:27.27And you get some idea of this... this is a 3D view of an epithelial surface.
00:28:33.15Now, looking down on the apical surface, you see...
00:28:35.17here, it is... you can see how closely cemented one cell is to another
00:28:42.00through these junctions.
00:28:43.21And you do get the impression that it's almost like having... we have a molecular coat of armor
00:28:49.14that surrounds us all the time.
00:28:51.17And you can see that the underpart of the cells are here, and the top part is here.
00:28:56.27The top part really would communicate with the lumen
00:29:01.01of the stomach, or the intestine, or any epithelial surface and mucosa in the body.
00:29:06.29And the bottom part is going to communicate with the bloodstream
00:29:10.05and is important for getting nutrients into the cells
00:29:12.17and for cells secreting products into the bloodstream.
00:29:15.17So, we know that CagA works on this,
00:29:20.06and was CagA involved in the tight junctions? And the answer
00:29:27.21that Manuel Amieva found is that he took a wild-type
00:29:31.26organism, and he added it to the epithelial surface,
00:29:36.27and indeed the bacteria stuck to what looked like the tight junctions.
00:29:43.03If he took exactly the same strain with a mutation in CagA that made it non-functional,
00:29:48.04there was no association of the bacteria with the junctions.
00:29:51.15And you can see that here, in closer magnification.
00:29:56.11The bacterium is red, and you can see that it sits exactly in opposition to the tight junction.
00:30:03.16So, the data were that it stuck to the tight junction,
00:30:07.21and Amieva found that actually it was associated with a particular kind of molecule,
00:30:14.25which is called Zone Occludens Protein 1,
00:30:17.25but it's a protein that's in the part of the tight junction
00:30:22.18that is closest to the surface of the cell.
00:30:25.04And, you can see here in 3-dimensions now, as it turns, you can see
00:30:29.29how the bacterium is really sitting on the surface of the cell.
00:30:34.24We've stained for a molecule that we know is more basolateral
00:30:39.24in blue, and the tight junctions in green, and the bacterium is in red.
00:30:43.15And so you can see that it's at the surface,
00:30:46.06and we now also know that when Helicobacter attaches
00:30:51.15to the surface of the cell at the tight junction,
00:30:53.24that is the place for phosphorylated CagA protein is found.
00:30:58.24So, the data indicate that the bacteria attaches to the cell
00:31:03.03at the tight junction, it interacts with the ZO-1 protein,
00:31:06.28somehow the CagA molecule is translocated from the bacterium
00:31:11.22into the host cell, and right underneath the point of injection of the CagA protein,
00:31:17.23one finds phosphorylated CagA.
00:31:20.15This effect, as you can see here, is also associated with a loss
00:31:28.02in polarity. So, one of the things that happens here...
00:31:31.21Here's an organism that doesn't have CagA. It's sticking to the surface of the cell.
00:31:35.13And the tight junctions, you can see here are intact.
00:31:38.22The same organism with a functional CagA
00:31:43.01attaches to the surface of the cell, and in fact, it now opens up.
00:31:48.05The barrier is gone from the cell.
00:31:50.00Now, in order to understand CagA in a little more detail,
00:31:55.11we went ahead, and Fabio Bagnoli, together with Amieva,
00:31:59.29took a molecule of CagA, and they basically divided it into 2 parts:
00:32:05.07the amino-terminal part, and a carboxy-terminal part.
00:32:09.11And they could identify each one, using microscopic analysis.
00:32:13.16Now, when we did that, one of the things we found is that
00:32:18.02the first part of the CagA molecule is associated with attachment
00:32:23.01to the surface of an epithelial cell.
00:32:25.20And since this had been tagged with a fluorescent marker,
00:32:28.13you can see that the cell that receives CagA is now
00:32:31.09fluorescent green, and it's just the outline of the cell.
00:32:34.24Now, the carboxy-terminal part of the molecule
00:32:38.21is the part that's phosphorylated by the host cell kinase.
00:32:42.22And, when that's injected into a cell,
00:32:45.21what you see is that the cell elongates.
00:32:49.21It stays in place, but it becomes very long. It loses its usual morphology.
00:32:55.01If you take the entire molecule -- both parts that are labelled --
00:33:01.04and put it into a cell, what you can see is that the cell not only elongates,
00:33:06.12it actually moves, and you can perhaps appreciate this a little better here,
00:33:11.01where we have pseudocolored the surrounding cells,
00:33:15.03and what you can see is that a cell that has CagA,
00:33:16.22which is going to be in green,
00:33:17.28takes and moves away.
00:33:20.15And you can see this cell simply move out of the monolayer.
00:33:24.11So, CagA binds to the tight junctions,
00:33:32.04it breaks down the junctions between cells,
00:33:34.20polarity is lost, and the cells migrate.
00:33:38.09Now, when one looks at those different parameters
00:33:42.27and asks, "What is this reminiscent of?"
00:33:46.05One of the things its reminiscent of is something that happens
00:33:49.24during embryonic development, and that is gastrulation during embryogenesis.
00:33:54.17And this is a transition of epithelial cells to mesenchymal cells.
00:34:00.07And this is actually a picture, not of cells with CagA moving,
00:34:03.26but in fact of cells in a developing embryo moving
00:34:07.15from an epithelial site and becoming mesenchymal.
00:34:12.10This is this kind of transition which is called epithelial-mesenchymal
00:34:18.13transition, or EMT, is known to occur in tumor progression,
00:34:23.01and it's been also described as being important in the evolution of cancer.
00:34:32.16So, is that the function, then of CagA?
00:34:35.24To come in and change a cell and somehow make it move and as a result of this
00:34:42.10cancer occurs?
00:34:44.14So, one has to ask then, what is the role of CagA in malignant transformation?
00:34:50.03We know CagA is associated with a probability of developing cancer.
00:34:54.03That much is clear.
00:34:56.13And, one could make the argument that, because CagA comes in,
00:35:02.07disrupts the junction, it causes a loss of polarity,
00:35:07.09and this cell that has CagA now moves out of the monolayer
00:35:12.00and begins to migrate,
00:35:14.05that this is a malignant kind of event.
00:35:18.24Or, really, this is a malignant transformation.
00:35:21.06So, we know that CagA is associated with cancer,
00:35:26.20but it takes decades. So, one can't argue that
00:35:33.19Helicobacter pylori comes in, attaches to the surface of the mucosa,
00:35:36.11immediately causes a malignancy. It doesn't.
00:35:39.26It takes decades to occur, so people are infected with Helicobacter early in their
00:35:45.04childhood. They can either be symptomatic or have gastritis.
00:35:51.10If the gastritis is very serious, you have destruction of the stomach,
00:35:55.24They may get ulcers, they may go on and develop cancer.
00:36:00.24But, one sees cancer in elderly people, rather than children.
00:36:05.17So, what is CagA's role in this?
00:36:10.21It's clearly associated with cancer. It's clearly associated with inflammation.
00:36:15.01But, what's in it for the bug?
00:36:19.08So, CagA... does it really evolve so that the organism causes cancer?
00:36:26.02Or is cancer more or less an accident of the host-pathogen interaction...
00:36:30.25More or less a souvenir left by the organism
00:36:34.06in some people of the right genetic disposition?
00:36:37.08So, Helicobacter pylori is not the only microorganism
00:36:44.04that affects tight junctions. There are other organisms.
00:36:49.07Cholera, for example, can also affect the junctions.
00:36:53.09There are a number of organisms and even viruses
00:36:57.20that affect tight junctions.
00:37:00.02Now, one of the organisms that affects tight junctions is
00:37:03.16an organism called Enteropathic E. Coli or EPEC.
00:37:07.04You probably know it best as the organism that causes hemolytic diarrhea
00:37:12.14the EHEC strain that everyone talks about that you see in contaminated beef.
00:37:16.19And what is known about EPEC is that it goes to the tight junctions,
00:37:21.13and it also causes a change in the polarity of the epithelial cells.
00:37:29.23Now, remarkably, EPEC, like Helicobacter... or Helicobacter, like EPEC,
00:37:36.11is a microbe that sits on the surface of the cell and communicates
00:37:42.08with the host cell and the bacterium through a tube.
00:37:46.17And it secretes a protein from the bacterium into the host cell.
00:37:52.04In this case, it's a protein called Tir.
00:37:56.11And interestingly, Tir is also phosphorylated by a host cell kinase,
00:38:01.25just like CagA.
00:38:04.03And, the Tir protein actually acts as a special site
00:38:10.19for further bacterial attachment -- a tighter kind of attachment
00:38:15.06through a protein on the surface of the organism called Intimin.
00:38:18.28This interaction between the bacterium and the Tir receptor
00:38:23.13that was put there by the bacterium really leads to a change in the cytoskeletal distribution
00:38:29.12of proteins.
00:38:31.11And when you look at the net result, you can see that you have the organism
00:38:36.13sitting essentially like a queen on a throne of actin,
00:38:41.23which it has induced.
00:38:44.26And when you look at this during infection of tissue,
00:38:46.26you can see that you get microcolonies of bacteria
00:38:51.10on the surface of the epithelial cell.
00:38:54.15Does CagA have a similar colonization function?
00:38:59.29If you look at long-term infection of tissue culture,
00:39:04.06with CagA, you can see that you get accumulations of bacteria
00:39:09.12all along the tight junctions.
00:39:12.14And, in fact, in some cases, where bacteria accumulate,
00:39:16.00you get pieces of ZO-1 protein or tight junctional protein
00:39:21.04that are accumulated below the bacteria, as if this is
00:39:26.29an aberrant synthesis of tight junctions around the bacterial cell.
00:39:32.05And if you look at infected tissue, you can see that in the case of Helicobacter pylori
00:39:38.19you see microcolonies on the surface.
00:39:41.00So, the question is whether or not the CagA is actually evolved
00:39:48.27to cause cancer, which is unlikely, or actually evolved to help the organism colonize better.
00:39:56.00That's a question now for continuing research,
00:40:00.11but we do know that the pathogenesis
00:40:04.22of bacterial infection is reflective of ongoing evolution between a parasite and a particular host.
00:40:11.07And, the study of Helicobacter pylori and the host is one that raises questions
00:40:17.27about this intimate relationship.
00:40:20.05Now, is disease the result of an actual microbial strategy?
00:40:33.09Or is it an experiment or a mistake?
00:40:36.03It's something that's gone wrong.
00:40:38.15Are; the things like CagA that we call virulence factors
00:40:43.14actually have a biological role in another context?
00:40:47.23So, while we look at Helicobacter from the standpoint of cancer and ulcer disease and gastritis
00:40:54.24one has to remember that is the exception, rather than the rule.
00:41:00.11Now, if one reflects about this,
00:41:03.25and asks what we know about pylori...
00:41:07.08We know it's associated with cancer and ulcer disease.
00:41:10.20We know that most humans in the world have it.
00:41:13.27And, we ask, what does that mean in a larger context?
00:41:20.06Well, one of the things that we can do is take a step backwards
00:41:25.21and say, we know medical progress has reduced the mortality
00:41:30.21due to infectious diseases dramatically.
00:41:34.04So, the rate here was high at one time, and over from 1900 until the new millennium,
00:41:43.18it was down to very small numbers.
00:41:46.13Now, we also know, in other parts of the world,
00:41:51.12that's no longer true.
00:41:53.28That's not true, I should say.
00:41:56.24The percentage of deaths due to infectious diseases worldwide
00:42:00.12is still largely due to infections.
00:42:02.22So, we still see that people who die in the world outside of the technologically advanced one
00:42:10.19die because they have infections.
00:42:12.15For example, diarrheal diseases still account for 17% of the overall deaths in the world.
00:42:19.02If one talks about children, it's even greater.
00:42:23.11The vast majority of deaths in children
00:42:28.17five years or less, worldwide, are due to infections.
00:42:33.29So, we don't suffer from infections in the United States
00:42:38.16and other technologically advanced countries in the world,
00:42:41.24but in the rest of the world, it is still the leading cause of death or infection.
00:42:45.25Now, coincident with the reduction in infectious diseases in the United States
00:42:52.09and other parts of the world, there's been a reduction
00:42:57.18in the number of people who carry Helicobacter pylori.
00:43:01.03More importantly, with the reduction of Helicobacter pylori,
00:43:08.09there's been a reduction in stomach cancer
00:43:11.11in both males and in females.
00:43:15.14So, stomach cancer has declined abruptly
00:43:19.12over the years.
00:43:22.00One aspect, however, that is perhaps surprising is that
00:43:29.08Helicobacter infection has gone down, gastric cancer has gone down,
00:43:34.05but diseases of the esophagus -- gastric reflux,
00:43:38.01a disease called Barrett's esophagus, and indeed esophageal cancer --
00:43:42.29have been coming up
00:43:45.14And there is now evidence that, if you've had Helicobacter pylori,
00:43:53.05you're actually protected against esophageal disease.
00:43:57.04And, the data on this are relatively good.
00:44:01.07And not only are the data that having Helicobacter pylori
00:44:06.17is somehow protective against esophagitis, Barrett's esophagus,
00:44:13.07it's that it's actually having a CagA+ strain that is protective against it.
00:44:19.29Now, I want to take a step back and remind you
00:44:25.10that Helicobacter pylori has been with humans since the beginning of humanity as we know it.
00:44:32.15So, if over 90% of all humans had Helicobacter pylori through most of history,
00:44:40.26should we consider pylori as being part of the normal human flora
00:44:49.06that betrays itself only by making an occasional person ill?
00:44:53.15And, I want to remind you that we carry an enormous number of microbial cells --
00:45:00.0310 times more than we do our own cells.
00:45:03.02And, we don't know yet what the contribution of these different organisms
00:45:10.04that we can consider normal are in health or disease
00:45:15.07because most of them have never been cultured.
00:45:18.03And indeed, we didn't know about Helicobacter pylori
00:45:20.26until about 25 years ago.
00:45:23.24So, Helicobacter pylori has decreased.
00:45:30.27It may have been a normal species of bacteria for humans
00:45:34.09that played, perhaps, a role.
00:45:36.22And we have to ask, is pylori a surrogate for other organisms
00:45:41.24that are being wiped out by human progress?
00:45:44.26So, I want to emphasize that the information is that there is a correlation between
00:45:49.17having Helicobacter and being protected against disease.
00:45:55.09Not necessarily that it is pylori itself that protected against disease.
00:46:00.14So, Helicobacter is more-or-less a marker.
00:46:03.19So, if we ask, then, have we technologically advanced to the point
00:46:09.28where we're removing organisms that once were normal parts of our flora
00:46:15.02have gone by the wayside because of antibiotics
00:46:18.14and changes in public health?
00:46:21.16And what one can look at is the following:
00:46:26.03and that is that, yes, infectious diseases have all come down over time.
00:46:31.11Tuberculosis, hepatitis, rheumatic fever, measles.
00:46:36.18On the other hand, diseases like multiple sclerosis,
00:46:39.25diabetes, and asthma, which have been called immune disorders
00:46:44.22have all come up.
00:46:46.12And so, is it that we are actually changing the human condition
00:46:55.26in terms of its microbial flora and that protective effects
00:47:00.20are being lost for protection against disease?
00:47:06.18One can only say that, if we talk about the interaction between microbes and host,
00:47:14.20and humans, included...
00:47:18.10We can quote Rene Dubos, who was a microbiologist who lived
00:47:22.25in the middle part of the last century
00:47:26.15and worked at Rockefeller University,
00:47:29.02and he was very interested in what were normal microbes.
00:47:32.22And he said that to regard any form of life
00:47:35.24as a slave or a foe will one day be considered poor philosophy,
00:47:39.29for all living things constitute an integral part of the cosmic order.
00:47:44.29So, the idea that all microbes are evil
00:47:49.15and ferocious and need to be wiped out may be an oversimplification
00:47:54.03of modern society.
00:47:56.00So, one can't give the answers to this.
00:47:59.21Helicobacter pylori is an interesting organism.
00:48:03.06CagA has taught us a fair amount about how tight junctions work
00:48:09.08and also something about how cancer can be initiated
00:48:14.13in humans.
00:48:17.03There is no doubt about it that the research will pay some dividends.
00:48:21.19I don't know where the Helicobacter, CagA story will end.
00:48:28.17It's still a work in progress.
00:48:30.05I can tell you one thing
00:48:33.10after 50 years, and that is, microbes always have the last laugh.
00:48:39.00Even if you study them carefully.
00:48:41.24

Videos in this Talk
  • Part 1: Host-Pathogen Interactions and Human Disease
    Part 1: Host-Pathogen Interactions and Human Disease
    Audience:
    • Student
    • Researcher
    • Educators of H. School / Intro Undergrad
    • Educators of Adv. Undergrad / Grad
  • Part 2: Helicobacter pylori and Gastric Cancer
    Part 2: Helicobacter pylori and Gastric Cancer
    Audience:
    • Student
    • Researcher
    • Educators of H. School / Intro Undergrad
    • Educators of Adv. Undergrad / Grad
Total Duration: 1:26:45
Recorded: May 2007
All Talks in Microbiology

Talk Overview

Ninety percent of the cells humans carry are microbes. Only a few of the bacteria we encounter are pathogenic and can cause disease. Pathogens possess the inherent ability to cross anatomic barriers or breach other host defenses that limit the microbes that make up our normal flora. A significant part of human evolution has gone into developing ways to thwart microbial intrusion. In turn, microbes have come up with clever ways to avoid and circumvent host defenses but human — microbe interactions are still a “Work in Progress.” When we study pathogens we learn as much about ourselves as we do about them.

Helicobacter pylori lives in the human stomach. It causes gastritis, ulcer disease and even gastric cancer. SomeH. pylori can inject a protein, CagA, into gastric epithelial cells. CagA interacts with the tight junctions that bind cells together and with signaling molecules affecting motility and proliferation. CagA is associated with ulcer disease and cancer but we don’t understand how it works to favor malignancy. Not long ago in history most humans carriedH. pylori; the incidence of carriage and gastric cancer is dropping but there is evidence that this microbe also had a protective effect on human health.

Speaker Bio

Stanley Falkow

Stanley Falkow

Stanley Falkow is the Robert W. and Vivian K. Cahill Professor of Microbiology and Immunology and of Medicine, Department of Microbiology and Immunology and Medicine, at the Stanford University School of Medicine. He has been on faculty since 1981. Before that he was on the faculty of the University of Washington and Georgetown University. Falkow…Continue Reading

Related Resources

Baron, Samuel (ed.) Medical Microbiology (Fourth edition)
Microbiology and Immunology On-line

Cossart, P , Boquet, P., Normark, S. Rappuoli, R. Cellular Microbiology, 2nd Edition 2004 ASM Press, Washington, D.C. 636pp.
Raskin, D.M., Seshadri, R., Pukatzki, S.U., and Mekalanos, J.J., Bacterial genomics and pathogen evolution. Cell, 2006. 124: p. 703-14.

Gal-Mor O, Finlay BB. Pathogenicity islands: a molecular toolbox for bacterial virulence. Cell Microbiol. 2006 11:p. 1707-19.

Additional Reading
Linz B, Balloux F, Moodley Y, Manica A et al. An African origin for the intimate association between humans and Helicobacter pylori. Nature. 2007 445:p. 915-8.

Falkow, S. Is persistent bacterial infection good for your health?” Cell, 2006 124:p. 699-702.
Blaser, M. J. “An endangered species in the stomach.” 2005 Sci Am 292:p. 38-45.

Mueller, A., S. Falkow, et al. “Helicobacter pylori and gastric cancer: what can be learned by studying the response of gastric epithelial cells to the infection?” Cancer Epidemiol Biomarkers Prev 2005 14: p. 1859-64.

Monack, DM, A Mueller, and S. Falkow. Persistent bacterial infections: the interface of the pathogen and the host immune system. Nat Rev Microbiol., 2004 2:747-65.

Blaser, M. J. and J. C. Atherton. Helicobacter pylori persistence: biology and disease. J Clin Invest. 2004. 113: p.321-333.

Vogelmann, R., M. Amieva, et al. “Breaking into the epithelial apical-junctional complex – news from pathogen hackers.” 2004. CURRENT OPINION IN CELL BIOLOGY 16: p.86-93.

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