Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach

• UpdatedMar 20, 2023
• R

Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis

• UpdatedApr 7, 2023
• R

Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations

• UpdatedOct 9, 2022
• R

Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

• UpdatedNov 9, 2022
• Jupyter Notebook

Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations

• UpdatedJul 15, 2023
• R

Estimating temporally variable selection intensity from ancient DNA data

• UpdatedApr 7, 2023
• R

Inferring the timing and strength of natural selection and gene migration in the evolution of chickens from ancient DNA data

• UpdatedOct 9, 2022
• R

Poker test for independence, Inversion method, Method of approximations, Rejection method, Quadratic congruent random number generator, Freedman–Diaconis rule, Fixation Index, Extended Haplotype Homozygosity, Wright-Fisher model

• UpdatedJul 4, 2022
• Python

Approximations for the Wright-Fisher model of population dynamics under natural selection at two linked loci

• UpdatedOct 10, 2022
• R