Movatterモバイル変換

Skip to content

#

whole-slide-imaging

Here are 91 public repositories matching this topic...

Language:All

Filter by language

All91 Python48 Jupyter Notebook15 JavaScript11 HTML3 Java3 Groovy2 C1 C#1 C++1 Elm1

Sort:Most stars

Sort options

Most stars Fewest stars Most forks Fewest forks Recently updated Least recently updated

CLAM

mahmoodlab /CLAM

Open source tools for computational pathology - Nature BME

deep-learning tcga-data weakly-supervised-learning bioimage-informatics digital-pathology clam pathology whole-slide-imaging computational-pathology camelyon16 histopathology camelyon17 data-efficient mahmoodlab quantitative-pathology

UpdatedDec 6, 2024
Python

qupath /qupath

QuPath - Open-source bioimage analysis for research

groovy opencv machine-learning imagej javafx image-processing histology cell-segmentation bioimage-informatics digital-pathology pathology whole-slide-imaging cell-analysis computational-pathology bioimage-analysis tissue-microarray-analysis

UpdatedMar 27, 2025
Java

baidu-research /NCRF

Cancer metastasis detection with neural conditional random field (NCRF)

deep-learning conditional-random-fields pathology whole-slide-imaging camelyon16

UpdatedOct 3, 2023
Python

computationalpathologygroup /ASAP

Program for the analysis and visualization of whole-slide images in digital pathology

whole-slide-imaging computation-pathology

UpdatedSep 12, 2023
C++

cgohlke /tifffile

Read and write TIFF files.

python image imagej numpy tiff format-reader life-sciences-image ome-tiff whole-slide-imaging zarr

UpdatedMar 14, 2025
Python

openslide /openslide

C library for reading virtual slide images

c pathology whole-slide-imaging

UpdatedMar 27, 2025
C

TissueImageAnalytics /tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

python machine-learning deep-learning image-analysis cell-segmentation digital-pathology whole-slide-imaging medical-image-analysis computational-pathology cell-classification histopathology stain-normalization tissue-segmentation tissue-analysis

UpdatedMar 24, 2025
Python

binli123 /dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

deep-neural-networks deep-learning pytorch transformer semi-supervised-learning weakly-supervised-learning whole-slide-imaging tumor-detection self-attention self-supervised-learning multiple-instance-learning histopathology whole-slide-image visiontransformer

UpdatedApr 29, 2024
Python

ome /bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

java metadata image format-reader format-converter bio-formats life-sciences-image whole-slide-imaging wsi lightsheet

UpdatedMar 14, 2025
Java

slideflow

slideflow /slideflow

Powerful, open-source AI tools for digital pathology.

python machine-learning deep-learning histology pathology whole-slide-imaging computational-pathology histopathology

UpdatedMar 26, 2025
Python

camicroscope /caMicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

slide-images digital-pathology whole-slide-imaging camicroscope

UpdatedMar 21, 2025
JavaScript

nadeemlab /DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

deep-learning pytorch stitching segmentation datasets image-segmentation multiplex super-resolution immunohistochemical-images cell-segmentation digital-pathology pathology whole-slide-imaging cell-biology cloud-native-applications multitask-learning pathology-image pathology-gan immunohistochemistry ai-ready

UpdatedMar 20, 2025
Python

ChongQingNoSubway /DGR-MIL

Code for paper: DGR-MIL: Exploring Diverse Global Representation in Multiple Instance Learning for Whole Slide Image Classification [ECCV 2024]

transformer weakly-supervised-learning whole-slide-imaging tumor-heterogeneity tumor-detection self-attention multiple-instance-learning tumor-classification histopathology histopathology-image-analysis

UpdatedDec 18, 2024
Python

MarvinLer /tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020https://arxiv.org/abs/2004.05024

tcga medical-imaging segmentation image-segmentation tcga-data weakly-supervised-learning miccai pathology whole-slide-imaging wsi computational-pathology multiple-instance-learning tumor-segmentation histopathology data-efficient slide-image-segmentation

UpdatedAug 5, 2021
Python

cylab-tw /bluelight

a browser-based DICOM viewer

html5 dicom dicomweb bluelight dicom-server whole-slide-imaging dicom-viewer orthanc wsi rtss dicom-web-viewer dicom-overlay

UpdatedMar 18, 2025
JavaScript

ChongQingNoSubway /PDL

Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "

weakly-supervised-learning whole-slide-imaging tumor-detection multiple-instance-learning histopathology histopathology-images whole-slide-image histopathology-image-analysis

UpdatedJul 11, 2024
Python

DIAGNijmegen /pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

python deep-learning iterator wsd pathology whole-slide-imaging wsi computational-pathology wsm wsa histopathology whole-slide-image whole-slide-annotation whole-slide-mask whole-slide-dataset whole-slide-data

UpdatedNov 21, 2024
Python

btcrabb /SlideSeg

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

convolutional-neural-networks semantic-segmentation digital-pathology whole-slide-imaging

UpdatedJun 21, 2022
Jupyter Notebook

cytomine /Cytomine-core

Cytomine-Core is the main web server implementing the Cytomine API

machine-learning digital-pathology whole-slide-imaging computational-pathology cytomine

UpdatedFeb 24, 2023
Groovy

SBU-BMI /wsinfer

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

deep-learning pytorch classification pathology whole-slide-imaging

UpdatedJul 11, 2024
Python

Improve this page

Add a description, image, and links to thewhole-slide-imaging topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with thewhole-slide-imaging topic, visit your repo's landing page and select "manage topics."

[8]ページ先頭

©2009-2025 Movatter.jp