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CogStack /MedCAT

Medical Concept Annotation Tool

nlp natural-language-processing information-extraction healthcare learn snomed ner collaborate umls electronic-health-records covid-19

UpdatedMar 18, 2025
Python

Georgetown-IR-Lab /QuickUMLS

System for Medical Concept Extraction and Linking

named-entity-recognition umls concept-extraction medical-informatics

UpdatedAug 12, 2024
Python

razorx89 /roco-dataset

Radiology Objects in COntext (ROCO): A Multimodal Image Dataset

medical dataset cuis radiology image-retrieval umls semantic-types

UpdatedApr 5, 2022
Python

leanderme /sytora

A sophisticated smart symptom search engine

classifier machine-learning embeddings medical healthcare classification data-analysis disease healthcare-datasets symptoms umls symptom-checker symptomchecker

UpdatedNov 19, 2018
JavaScript

zjunlp /Relphormer

[Neurocomputing 2023] Relational Graph Transformer for Knowledge Graph Representation

transformer knowledge-graph question-answering recommendation-system knowledge-graph-completion umls kg link-prediction wn18rr fb15k-237 knowledge-graph-representation relphormer

UpdatedJul 15, 2024
Python

CogStack-SemEHR

CogStack /CogStack-SemEHR

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

semantic-web electronic-health-record umls semantic-query semantic-annotation

UpdatedJan 13, 2023
JavaScript

GanjinZero /CODER

CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]

nlp embeddings medical multi-language umls pretrained-language-model

UpdatedJun 28, 2022
Python

CogStack /MedCATtrainer

A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

nlp machine-learning snomed umls active-learning medcat

UpdatedMar 18, 2025
Python

som-shahlab /trove

Weakly supervised medical named entity classification

text-classification ontology weak-supervision ner biomedical umls bert weakly-supervised-learning pseudo-labeling learning-with-noisy-labels umls-metathesaurus

UpdatedDec 23, 2022
Python

LHNCBC /metamaplite

A near real-time named-entity recognizer

named-entity-recognition umls metamap

UpdatedMay 28, 2024
Java

Colinasda /KGdatasets

知识图谱数据集

umls kinship wn18rr fb15k-237

UpdatedJun 15, 2021

clinical_informatics_umls

rcolinp /clinical_informatics_umls

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…

python neo4j rdf semantic-web ontology biomedical-informatics interoperability knowledge-graph graph-database umls py2neo neosemantics biomedical-ontologies medical-terminology

UpdatedMar 20, 2024
Python

umls_downloader

cthoyt /umls_downloader

Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically

python reproducible-research snomed reproducibility umls rxnorm snomed-ct semmeddb

UpdatedApr 2, 2024
Python

kbogas /medknow

Medical Relations and Entities Extraction

nlp neo4j biomedical umls relation-extraction metamap semrep

UpdatedJun 21, 2022
Python

acadTags /Rare-disease-identification

Rare disease identification from free-text clinical notes with ontologies and weak supervision

ontology weak-supervision clinical-notes mimic-iii ontology-matching umls entity-linking rare-disease ordo discharge-summaries

UpdatedMay 6, 2023
Python

sparrow-platform /disease-diagnostics-engine

Sparrow AI - API for disease diagnostics

nlp docker flask umls emergency-medical-services disease-prediction medical-diagnostics medical-ai umls-databases

UpdatedNov 21, 2022
Python

RyanDsilva /medical-ner

🏥 Clinical NER with UMLS lookup 🏥

python flask spacy flutter optical-character-recognition umls medical-natural-language-processing scispacy

UpdatedMar 20, 2020
Jupyter Notebook

Nguyendat-bit /UMLS-KG

Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy

python neo4j neo4j-driver knowledge-graph umls scispacy

UpdatedSep 7, 2022
Python

CogStack /MedCATservice

Running MedCAT as a RESTful web service

python nlp docker flask microservices rest spacy snomed umls

UpdatedFeb 26, 2025
Python

dhchenx /umls-graph

Build a medical knowledge graph based on Unified Language Medical System (UMLS)

umls medical-informatics domain-knowledge unified-medical-language-system medical-knowledge-graph umls-graph

UpdatedDec 25, 2021
Python

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