Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

• UpdatedMar 19, 2025
• Rust

Desktop utility that helps preventing repetitive strain injuries by keeping track of usage patterns and periodically informing the user to take breaks.

• UpdatedFeb 20, 2025
• Rust

Metabolic Engineering Workbench

• UpdatedJun 9, 2024
• Python

A python library for correlating EBSD and HRDIC data

• UpdatedFeb 5, 2025
• Python

Implementation of geometric phase analysis (GPA) in C++

• UpdatedDec 10, 2022
• C++

⚡🧠A finite element Python implementation

• UpdatedMar 4, 2025
• Python

Generates an Abaqus simulation batch describing a cracked half-plane, and outputs the J-integral

• UpdatedMar 7, 2017
• Python

A Schrödinger-Poisson solver for 2D materials with 1D interfaces (wires)

• UpdatedJan 24, 2022
• Python

An RNA virus strain-level identification tool for short reads.

• UpdatedMay 28, 2024
• Python

GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures

• UpdatedApr 23, 2023
• Python

Connected Hangboard for climbers

• UpdatedMar 24, 2022
• C

Computes the electronic band structure of bulk ZB semiconductor with k.p models WITH STRAIN

• UpdatedApr 1, 2021
• MATLAB

Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

• UpdatedAug 8, 2024
• Python

Bash scripts to plot coulomb results on gmt

• UpdatedJul 12, 2018
• Shell

Module of the SailTrack system for measuring the forces acting on the boat maneuvers.

• UpdatedNov 15, 2024
• C++

Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.

• UpdatedJun 27, 2024
• Python

A finite element code to solve for the dynamic fragmentation of concrete at different strain rates. A bi-linear cohesive zone model is used for the simulation

• UpdatedJan 25, 2019
• MATLAB

Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.

• UpdatedMay 16, 2024
• Shell

A simple PCB to use HX711 module in strain gauge applications.

• UpdatedFeb 2, 2022

FEM 1D example with Python

• UpdatedNov 16, 2022
• Jupyter Notebook