population-genetics
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An analysis and visualization platform for 'omics data
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Jul 11, 2025 - Python
An open-source toolkit for large-scale genomic analysis
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Jul 13, 2025 - Scala
Tools to work with variant call format files
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Feb 21, 2025 - R
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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Jul 8, 2025 - Nextflow
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
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Nov 21, 2022 - C
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
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Aug 24, 2023 - R
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
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Aug 21, 2023 - Perl
Application of pan-genome for population
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Oct 17, 2024 - Perl
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
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Jun 24, 2025 - Python
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
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Jun 27, 2025 - Python
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
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May 15, 2025 - C++
Causal Mixture Model for GWAS summary statistics
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Dec 12, 2023 - C
Rapid population clustering with autoencoders
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May 27, 2025 - Python
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
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Jun 19, 2025 - R
A library for working with phylogenetic and population genetic data.
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Jul 13, 2025 - C++
LDlinkR
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Apr 17, 2024 - R
Population genetic simulations in R 🌍
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Jul 9, 2025 - R
feature-based deep learning for the identification of selective sweeps
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Jun 3, 2025 - Python
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
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Jan 22, 2025 - Perl
deep learning prediction of geographic location from individual genome sequences
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Jan 20, 2025 - Python
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