An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.

• UpdatedSep 4, 2023
• C++

An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.

• UpdatedSep 19, 2023
• C++

Type an M x M matrix for your open quantum system Hamiltonian, and give a spectral density (analytic or numerical). FeynDyn gives the density matrix dynamics according to the Leggett-Caldeira bath or the Feynman-Vernon bath at any temperature. Can do up to 16 qubits (65536 levels) and infinitely many bath modes. Email nike@hpqc.org for the lates…

• UpdatedSep 7, 2022
• MATLAB

GDAY simulates carbon, nitrogen & water dynamics

• UpdatedFeb 24, 2022
• C

Code to reproduce the analysis and figures in 'A constraint on historic growth in global photosynthesis due to increasing CO2' Keenan et al. 2021. Naturehttps://www.nature.com/articles/s41586-021-04096-9

• UpdatedOct 17, 2023

Small model to simulate biomass production on a global scale. Products are Gross Primary Production (GPP), Net Primary Production (NPP). It is based on a modified version of the Farquhar approach (Haxeltine and Prentice 1996, Farquhar et al. 1980). Where possible, it uses vectorization and parallelization and dynamically downloads latest av

• UpdatedFeb 26, 2021
• R

🍃 coupled leaf gas-exchange model

• UpdatedApr 15, 2024
• Julia

R scripts for automatic correction of Rapid A-Ci curves

• UpdatedSep 16, 2020
• R

coupled leaf gas-exchange model for C₄ leaves comparing stomatal conductance models

• UpdatedOct 12, 2023
• Jupyter Notebook

Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client

• UpdatedAug 17, 2022
• JavaScript

GUI for the C3 photosynthesis Farquhar, von Caemmerer & Berry model (1980)

• UpdatedJun 30, 2020
• MATLAB

Fast and Efficient Processing of PAM Data

• UpdatedFeb 28, 2025
• R

[accepted] This is my playground submitted for WWDC18 Scholarship

• UpdatedApr 5, 2018
• Swift

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

• UpdatedSep 7, 2022
• MATLAB

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

• UpdatedJan 14, 2022

Apple II source code, in the Forth language, for a commercial photosynthesis educational program

• UpdatedOct 10, 2021

Helper functions for Licor 6400 IRGA gas exchange files

• UpdatedDec 8, 2019
• R

CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks

• UpdatedAug 15, 2022
• Jupyter Notebook

the LI6400 portable photosynthesis meter exports data as a series of poorly formatted .xls files. If you've used "add remark" to indicate sample ID, these are shown as rows, not a separate column. This script extracts relevant data, and moves the sample ID information from remarks into a column.

• UpdatedJul 31, 2019
• R

Import data output from Visual Phenomics into a DataFrame

• UpdatedAug 1, 2023
• Python