The Pharmacogenomic Clinical Annotation Tool

• UpdatedMar 18, 2025
• Java

A Python package for pharmacogenomics (PGx) research

• UpdatedFeb 15, 2025
• Python

A tool to genotype CYP2D6 with WGS data

• UpdatedOct 14, 2023
• Python

PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction prediction

• UpdatedMay 21, 2024
• Python

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

• UpdatedMar 26, 2025
• Python

This repository is the collection point of reference data for the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

• UpdatedMar 20, 2025
• HTML

Text mining for pharmacogenomic associations for PharmGKB

• UpdatedNov 4, 2022
• TeX

💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome

• UpdatedMar 25, 2025
• Dart

Velodrome combines semi-supervised learning and out-of-distribution generalization (domain generalization) for drug response prediction and pharmacogenomics

• UpdatedNov 17, 2021
• Python

A phase-aware pharmacogenomic diplotyper for PacBio datasets

• UpdatedMar 19, 2025
• Rust

A clinical decision-support system to identify pharmacogenomics profiles based on subjects genotype of five core genes. The paper has been published in the Journal of Personalized Medicine.

• UpdatedSep 1, 2021
• R

PGxCorpus, a manually annotated corpus, designed for the extraction of pharmacogenomic relations from text.

• UpdatedOct 28, 2019
• Lua

DWFA consensus algorithm for pb-StarPhase

• UpdatedDec 5, 2024
• Rust

Introduction to R for Bioinformatics

• UpdatedJan 24, 2022
• R

R scripts included in a bioinformatics pipeline for differential PGx analysis of cancer drug response

• UpdatedDec 8, 2021
• R

• UpdatedJul 4, 2017

Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"

• UpdatedOct 20, 2021
• R

A lightweight and simple ontology to reconcile and trace knowledge in pharmacogenomics

• UpdatedJun 6, 2019

This is my honors project in Computer Science 2020. It is a simple Python Dash web interface that analyses CYP enzymes variability and their drug interactions using VCF files

• UpdatedNov 18, 2020
• Python

Genome-Wide Association Study (GWAS) and Polygenic Risk Score (PRS) Shiny App!

• UpdatedJan 15, 2024
• HTML