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neuroscience-methods

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CEBRA

AdaptiveMotorControlLab /CEBRA

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

machine-learning pytorch neuroscience-methods contrastive-learning

UpdatedMar 15, 2025
Python

asoplata /open-computational-neuroscience-resources

A publicly-editable collection of open computational neuroscience resources

awesome computational-biology neuroscience computational-neuroscience open-science awesome-list brain neuroimaging-data neuroscience-methods neuroscience-data neural-simulators electrophysiological-data neuron-models neural-simulations simulation-neuroscience

UpdatedApr 11, 2024

neurolib-dev /neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

neuroscience computational-neuroscience neural-networks brain-network neuroscience-methods mean-field-theory brain-simulations brain-modeling

UpdatedJan 9, 2025
Python

MouseLand /rastermap

a visualization method for neural data

neuroscience neuroscience-methods unsupervised-clustering

UpdatedApr 4, 2025
Python

EEGEdu

kylemath /EEGEdu

Interactive Brain Playground - Browser based tutorials on EEG with webbluetooth and muse

react-native curriculum js data-visualization eeg openbci ecg muse data-analysis educational plotting eeg-data bci frequency-domain neurotech neuroscience-methods brain-waves muse-data muse-lsl muse-headsets

UpdatedDec 21, 2023
JavaScript

Mark-Kramer /Case-Studies-Python

An introduction to the practicing neuroscientist to data analysis in Python

python data-analysis neuroscience-methods neuroscience-data

UpdatedMar 7, 2023
Jupyter Notebook

JATOS /JATOS

Just Another Tool for Online Studies

neuroscience psychology psychology-experiments online-studies neuroscience-methods online-experiment jatos

UpdatedApr 4, 2025
JavaScript

tbrouns /eyestalker

Robust video-based eye tracking using recursive estimation of pupil characteristics

open-source gui algorithm prediction eye-tracking neuroscience-methods pupil-detection recursive-estimation pupil-characteristics video-oculography

UpdatedApr 11, 2022
C++

themattinthehatt /behavenet

Toolbox for analyzing behavioral videos and neural activity

computer-vision neuroscience-methods behavioral-videos

UpdatedDec 3, 2023
Python

SchwarzNeuroconLab /DeepLabStream

Closed-loop behavioral experiment toolkit using pose estimation of body parts.

behavior-analysis animal-behavior neuroscience-methods animal-science deeplabcut closed-loop-experiments

UpdatedJul 1, 2023
Python

shlizee /NeuroAI

NeuroAI-UW seminar, a regular weekly seminar for the UW community, organized by NeuroAI Shlizerman Lab.

data-science ai deep-learning recurrent-neural-networks neural-networks cvpr sfn icml neuroscience-methods eccv neurips

UpdatedMar 7, 2025

bahanonu /imaging_tools

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

neuroscience imaging-informatics calcium-imaging motion-correction imaging neuroscience-methods signal-extraction imaging-analysis

UpdatedSep 15, 2023

yulewang97 /ERDiff

[NeurIPS'23 Spotlight] Official Repo for "Extraction and Recovery of Dpatio-temporal Structure in Latent Dynamics Alignment with Diffusion Models"

domain-adaptation neuroscience-methods diffusion-models neural-alignment

UpdatedMar 10, 2025
Python

PennLINC /CuBIDS

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

neuroscience neuroimaging neuroinformatics python-package data-curation neuroscience-methods neuroimaging-data-science data-organization

UpdatedApr 4, 2025
Python

naplab /naplib-python

Tools and functions for neural data processing and analysis in python

python neuroscience neuroscience-methods acoustic-features auditory-stimuli auditory-cortex

UpdatedApr 10, 2025
Python

jajcayn /pygpso

Gaussian-Processes Surrogate Optimisation in python

neuroscience python3 gaussian-processes optimisation neuroscience-methods bayesian-optimisation gpflow space-partition-tree gaussian-processes-surrogate scale-biophysical-models partition-tree brainweb

UpdatedMay 18, 2021
Python

electroCUDA

kevmtan /electroCUDA

Robust electrophysiology tools with GPU acceleration

signal-processing neuroscience meg eeg eeg-signals electrophysiology ica eeg-analysis neuroscience-methods eeg-classification eeg-signals-processing ieeg seeg intracranial-eeg neurosurgery eeg-preprocessing eeg-pipeline eeg-signals-classification eeg-components eeg-statistics

UpdatedNov 15, 2024
Cuda

BrainDynamicsUSYD /NeuroPattToolbox

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

optical-flow neuroimaging-analysis neuroscience-methods

UpdatedApr 20, 2021
MATLAB

bsotomayorg /SpikeShip

SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

python spike-trains neuroscience-methods pattern-detection population-coding spike-timing

UpdatedApr 18, 2024
Jupyter Notebook

yulewang97 /BeNeDiff

[NeurIPS'24 Poster] Official Repo for Paper "Exploring Behavior-Relevant and Disentangled Neural Dynamics with Generative Diffusion Models"

latent-semantic-analysis neuroscience-methods diffusion-models

UpdatedOct 15, 2024
Python

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