imagej-plugins
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ImageJ macros and scripts written at the imaging facility MRI
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Mar 17, 2025 - Jupyter Notebook
ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection
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Oct 21, 2024 - Java
Flow-Registration toolbox for 2P motion compensation
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Jul 26, 2024 - MATLAB
Plugins for bone image analysis
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Feb 10, 2025 - Java
ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
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Jul 4, 2022 - ImageJ Macro
Collaborative Approach for eNhanced Denoising under Low-light Excitation
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Mar 6, 2024 - C
Image processing software for textbooks by W. Burger & M. Burge
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May 11, 2023 - Java
Imagej macro to calculate the MTF based on a knife edge measurement
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Jan 7, 2025 - ImageJ Macro
ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
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Mar 8, 2023 - Java
Detection of Molecules plugin for ImageJ, Utrecht University
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Nov 16, 2022 - Java
ImageJ library to detect and analyse connected components (blobs) in binary images
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May 24, 2024 - Java
Raw Bayer pattern to color image converters
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Jan 15, 2023 - Scala
ImageJ plugin to read xrm files.
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Nov 14, 2017 - Java
A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.
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Jul 31, 2024 - Java
FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis
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Feb 10, 2023 - Java
Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.
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Oct 14, 2024 - Java
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
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Dec 3, 2024 - Java
Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.
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Feb 24, 2025 - Python
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