⚡ ♒ Rapid prokaryotic genome annotation

• UpdatedApr 10, 2024
• Perl

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

• UpdatedMar 11, 2025
• Python

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, seehttps://github.com/GMOD/jbrowse-components.

• UpdatedMar 19, 2025
• JavaScript

Extensive de-novo TE Annotator

• UpdatedMar 1, 2025
• Perl

Eukaryotic Genome Annotation Pipeline

• UpdatedMar 7, 2025
• Python

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

• UpdatedOct 12, 2023
• Python

Genomic Data Retrieval with R

• UpdatedFeb 3, 2025
• R

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

• UpdatedFeb 25, 2025
• Perl

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

• UpdatedJun 20, 2024
• Python

Earl Grey: A fully automated TE curation and annotation pipeline

• UpdatedMar 19, 2025
• Python

High-precision TE Annotator

• UpdatedMar 5, 2025
• Python

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

• UpdatedJan 24, 2018
• Python

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

• UpdatedFeb 26, 2025
• Python

convert various features into a GFF-like file for use in genome browsers

• UpdatedFeb 26, 2025
• Python

A fully automated gene annotator from RNA-Seq expression data

• UpdatedJul 1, 2023
• Python

Read Assembly and Annotation Pipeline Tool

• UpdatedOct 3, 2024

A parallel wrapper for LTR_FINDER

• UpdatedJan 8, 2024
• Perl

Tools to annotate genomes using long read transcriptomics data

• UpdatedDec 8, 2020
• Go

A set of workflows written in Nextflow for Genome Annotation.

• UpdatedJul 1, 2024
• Nextflow

Genome Annotation Without Nightmares

• UpdatedJan 24, 2025
• Perl