MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

• UpdatedJul 12, 2024
• C

Same species annotation lift over pipeline.

• UpdatedJul 21, 2023
• Ruby

GeneValidator: Identify problems with predicted genes

• UpdatedMar 1, 2024
• Ruby

Genome Annotation for the Masses

• UpdatedJul 9, 2017
• JavaScript

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

• UpdatedJan 28, 2025
• Rust

Nextflow pipeline for genome annotation of protein-coding genes

• UpdatedDec 21, 2023
• Nextflow

iPat allows you to perform GWAS and GS with drags and clicks!

• UpdatedJul 12, 2022
• Java

Python3 wrapper for parallelized gene prediction using Prodigal

• UpdatedMar 3, 2023
• Python

Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS

• UpdatedJul 20, 2017
• Shell

scripts associated with yam genome assembly

• UpdatedMay 8, 2020
• Python

Scalable high-throughput short-read open reading frame prediction

• UpdatedAug 24, 2021
• C

Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples

• UpdatedMar 12, 2024
• Python

Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products

• UpdatedApr 11, 2017
• Python

ncRNA identification, annotation and functional prediction

• UpdatedDec 21, 2023
• Python

The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.

• UpdatedDec 21, 2023
• Python

Create a SNAP model from BUSCO output

• UpdatedApr 14, 2022
• Perl

Practical and home works in the discipline Bioinformatics.

• UpdatedSep 25, 2023
• HTML

Prediction of genes in genomes with ambiguous stop codons

• UpdatedSep 28, 2022
• Java

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

• UpdatedDec 12, 2023
• Shell

Cpp Programs for feature extraction

• UpdatedOct 17, 2019
• C++