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ehrbase /ehrbase

An open source openEHR server

clinical ehr openehr cdr clinical-data

UpdatedMar 17, 2025
Java

sigven /pcgr

Personal Cancer Genome Reporter (PCGR)

interpreter cancer clinical tumor vcf cancer-genomics reporting-engine copy-number-variation annotation-tool somatic cancer-variants annotation-framework snvs oncology-data precision-oncology variant-interpretation therapeutic-targets precision-cancer-medicine

UpdatedMar 15, 2025
R

kyzhouhzau /Clinical-NER

面向中文电子病历的命名实体识别

crf clinical ner 2017 wapiti ccks

UpdatedMay 18, 2020
C

mne-tools /mne-cpp

MNE-CPP: A Framework for Electrophysiology

visualization c-plus-plus machine-learning qt qmake real-time cross-platform analysis signal-processing neuroscience clinical biomedical-informatics meg eeg computational-neuroscience qt3d mne mne-cpp healthcare medical-imaging

UpdatedMay 9, 2024
C++

DouglasNeuroInformatics /OpenDataCapture

An electronic data capture platform for administering remote and in-person clinical instruments

react nodejs multilingual typescript research clinical monorepo full-stack form-builder data-collection monaco-editor electronic-data-capture prisma tailwindcss esbuild turborepo

UpdatedMar 12, 2025
TypeScript

starmpcc /Asclepius

Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"

clinical medical synthetic-data llm asclepius

UpdatedAug 22, 2024
Python

ding-lab /CharGer

Characterization of Germline variants

bioinformatics annotations clinical variants characterization pathogenicity clinvar vep diseases pathogenic-variants germline-variants exac acmg gnomad

UpdatedMar 15, 2022
Python

starmpcc /CAMEL

Clinically Adapted Model Enhanced from LLaMA

clinical camel llama gpt alpaca llm large-language-model self-instruct

UpdatedSep 1, 2023
Python

nf-core /oncoanalyser

A comprehensive cancer DNA/RNA analysis and reporting pipeline

workflow pipeline nextflow cancer panel ngs clinical dna rna wgs exome wts nf-core targeted wigits

UpdatedMar 19, 2025
Nextflow

apache /ctakes

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

nlp bioinformatics clinical

UpdatedMar 18, 2025
Java

medkey-org /medkey

Medkey Hospital Information System main repository: Practice Management for Practicioners & Hospitals, EHR, Patient Engagement

emr automation modular clinical ehr dental doctor-appointment-management hospital-management-system

UpdatedDec 2, 2022
PHP

Clinical-Genomics /MIP

Mutation Identification Pipeline. Read the latest documentation:

pipeline analysis clinical variants

UpdatedMar 5, 2024
Perl

fedbiomed

fedbiomed /fedbiomed

A collaborative learning framework for empowering biomedical research

learning ai analytics clinical healthcare collaborative federated biomedical multicentric

UpdatedMar 19, 2025
Python

zenetio /ai-4-clinical-workflow

Integrating AI to Clinical Workflow

ai integration gpu inference clinical artificial-intelligence alzheimers-disease

UpdatedJun 22, 2022
Python

lrsoenksen /SPL_UD_DL

A reported 96,480 people were diagnosed with melanoma in the United States in 2019, leading to 7230 reported deaths. Early-stage identification of suspicious pigmented lesions (SPLs) in primary care settings can lead to im- proved melanoma prognosis and a possible 20-fold reduction in treatment cost. Despite this clinical and economic value, eff…

machine-learning clinical artificial-intelligence

UpdatedSep 19, 2024
Python

ritaranx /RAM-EHR

[ACL 2024] This is the code for our paper ”RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records“.

nlp clinical medical healthcare electronic-health-record llm retrieval-augmented-generation

UpdatedSep 19, 2024
Python

geniusrise /awesome-healthcare-datasets

Healthcare and biomedical datasets, for AI/ML

clinical healthcare awesome-list datasets omics imaging biomedical

UpdatedFeb 23, 2025

PlanTL-GOB-ES /lm-biomedical-clinical-es

Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).

nlp transformers clinical spanish corpora language-model biomedical

UpdatedNov 16, 2022
Python

openlifescience-ai /ai-deadlines

workshop acl clinical conferences healthcare medical-imaging clinical-trials acm biomedical clinical-research pmlr neurips openreview medical-research

UpdatedFeb 13, 2024
JavaScript

Novartis /RBesT

Tool-set to support Bayesian evidence synthesis in R

clinical bayesian meta-analysis historical-data

UpdatedJan 21, 2025
R

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