semantic segmentation for magnetic resonance imaging

• UpdatedSep 21, 2021
• Python

meta-analysis of new and published human WAT single cell data

• UpdatedMar 12, 2025
• R

A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.

• UpdatedMar 12, 2023

Python pipelines for analysis of adipocyte scRNA-seq data

• UpdatedFeb 20, 2025
• Jupyter Notebook

Algorithm created with Python to semi-automatically segment various depots of fat based on a Dixon sequence abdominal MRI scan. Anatomical landmarks of the MRI scan must be manually identified.

• UpdatedOct 2, 2019
• Python

Helper Functions for the MotrpacRatTraining6moWATData R Package

• UpdatedMar 7, 2024
• R

This program will take in MRI images in the NIFTI format and display them on the screen. The user will draw a closed contour around specified areas of fat at multiple axial slices. These results are saved in a file to be validated with the VisceralFatSegmentation program. This program is created using Qt and C++.

• UpdatedSep 15, 2017
• C++

Code for the IJMS paper (Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation)

• UpdatedJun 20, 2018
• R

Data and analysis results for the MoTrPAC PASS1B rat white adipose tissue manuscript

• UpdatedMay 1, 2024
• R

Python & R scripts collection for AdipoAtlas project

• UpdatedSep 23, 2021
• Python

Adipose Tissue Knowledge Portal

• UpdatedFeb 19, 2025
• R

INVESTIGATING THE ASSOCIATION BETWEEN POLYGENIC RISK SCORE OF ADIPOSE TISSUE FUNCTION AND CARDIOVASCULAR DISEASE

• UpdatedNov 14, 2023
• Stata

Unveiling adipose populations linked to metabolic health in obesity

• UpdatedDec 18, 2024
• R

Tabula Muris Senis Transcriptomic Secretome Database Generation + White Adipose Depot Analysis

• UpdatedAug 7, 2023

20.440 Group Project-Intercellular Communication in vivo

• UpdatedMay 14, 2024
• Jupyter Notebook