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1. KMCKMCPublic

   Fast and frugal disk based k-mer counter

   C++ 293 76

2. FAMSAFAMSAPublic

   Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

   C++ 158 28

3. colordcolordPublic

   A versatile compressor of third generation sequencing reads.

   C++ 51 14

4. kmer-dbkmer-dbPublic

   Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

   C++ 92 18

5. agcagcPublic

   Assembled Genomes Compressor

   C++ 166 14

6. PHISTPHISTPublic

   Phage-Host Interaction Search Tool

   C++ 27 2