• 😄 Pronouns: he/him
• 🔭 I have a PhD in Physics from University of Michigan - Ann Arbor working onLIGO underDr. Keith Riles. LIGO foundersBarry Barish,Kip Thorne, andRainer Weiss received the2017 Nobel Prize in Physics.
• 🔬I am co-PI onNSF Award 2320600 - MRI: Track 2 Development of a Platform for Accessible Data-Intensive Science and Engineering

• ORCID 0000-0003-1809-4431
• Research Gate
• GitLab
• StackExchange
• Mastodon @prehensilecode@hachyderm.io
• Mastodon @prehensilecode@mast.hpc.social

• Note on migrating MediaWiki articles to static MarkDown with mkdocs-material
• Slurm associations
• VMs on macOS 14.2 Sonoma
• Lenovo OneCLI 4.3.0 Linux bash completion bug
• Python packaging example with commandline script and module-level constant

• My Gists, including compilation recipes for various research software. Some highlights:
  • GPFS snapshotter script (Python)
  • HOWTO Link R with OpenBLAS
  • HOWTO Build NCBI NGS on RHEL 8
• Drexel University Research Computing Facility HPC documentation (I created and maintained documentation for the 9.5 years that I worked at URCF)

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1. alphafold_singularityalphafold_singularityPublic

   Singularity recipe for AlphaFold

   Python 34 13

2. python-daemon-examplepython-daemon-examplePublic

   Simple example of using python-daemon with logging and PID lock file

   Shell 40 13

3. egsnrcpyegsnrcpyPublic

   Python classes to manipulate phantoms and dose distributions used by EGSnrc

   Python 9 1

4. eclipse-planeclipse-planPublic

   Java code to convert data exported from Varian Eclipse® Treatment Planning System to inputs for EGSnrc, including CT images, 3D structures, and beam configurations with MLC. Requires Trispark’s Jav…

   Java 8 5

5. ligo_osc3ligo_osc3Public

   Original version of OSC3 for LIGO. This is out-of-date and only here for personal archival purposes.

   C++

6. ligo-locksegmentsligo-locksegmentsPublic

   A Tcl program to extract intervals of time during which the LIGO interferometer was in a required state.

   Tcl