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MetaEuk fails to access existing database with --metaeuk_db parameter

bugSomething isn't workingSomething isn't working

Status: Open.

#776 In nf-core/mag;

·ruqse openedon Mar 21, 2025

Add documentation for busco database download

enhancementNew feature or requestNew feature or request

Status: Open.

#775 In nf-core/mag;

·bjaysheel openedon Mar 19, 2025

Update CheckM2 modules to version 1.1.0

enhancementNew feature or requestNew feature or request

Status: Open.

#773 In nf-core/mag;

·amizeranschi openedon Mar 13, 2025

Process FAIDX removable in subworkflow ANCIENT_DNA_ASSEMBLY_VALIDATION (?)

bugSomething isn't workingSomething isn't working

Status: Open.

#772 In nf-core/mag;

·simoxb openedon Mar 12, 2025

Add documentation for bowtie2's alignment modes

enhancementNew feature or requestNew feature or request

Status: Open.

#765 In nf-core/mag;

·IceGreb openedon Feb 13, 2025

Fix version reporting for all subworkflows

bugSomething isn't workingSomething isn't working

good first issueGood for newcomersGood for newcomers

low-priority

Status: Open.

#761 In nf-core/mag;

·jfy133 openedon Feb 5, 2025

Remove unusued local modules

enhancementNew feature or requestNew feature or request

Status: Open.

#757 In nf-core/mag;

·jfy133 openedon Jan 30, 2025

Replace QUAST custom modules with official nf-core ones

enhancementNew feature or requestNew feature or request

Status: Open.

#748 In nf-core/mag;

·amizeranschi openedon Jan 20, 2025

Compress FASTA files with contigs and scaffolds using bgzip instead of gzip, to enable file indexing

enhancementNew feature or requestNew feature or request

Status: Open.

#746 In nf-core/mag;

·amizeranschi openedon Jan 19, 2025

Add new features and Improvement to nf-core/mag: Trimmomatic, contigs param for binning, new concoct default params

enhancementNew feature or requestNew feature or request

Status: Open.

#744 In nf-core/mag;

·Pranjal-Bioinfo openedon Jan 16, 2025

Ensure unique contig names across assemblies, for chaining pipeline with magmap

enhancementNew feature or requestNew feature or request

Status: Open.

#742 In nf-core/mag;

·amizeranschi openedon Jan 6, 2025

Update multiqc config to support new modules

good first issueGood for newcomersGood for newcomers

Status: Open.

#739 In nf-core/mag;

·jfy133 openedon Dec 22, 2024