29 of 47 steps (62%) donerule 54:abix, 2_alignments.itref/1_reference/00002.fa, 2_alignments.itref/1_reference/00002.fa.fai, 2_alignments.itref/5_vcf/00002.vcf.gz

The site gi|386853410|ref|NC_017717.1|:27511 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:27512 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:56819 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:79988 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:122891 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:208363 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:225832 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:256017 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:286078 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:293988 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:307690 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:325324 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:421297 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:505903 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:548364 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:548367 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:676833 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:710469 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:755389 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:873401 overlaps with another variant, skipping...The site gi|386853410|ref|NC_017717.1|:888498 overlaps with another variant, skipping...