Popular repositoriesLoading

1. AugusMakeAugusMakePublic

   The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: …

   Python 2

2. singularity-recipessingularity-recipesPublic

   Recipes for Singularity

   1

3. astral-species-treeastral-species-treePublic

   This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a specie…

   Python

4. supermatrix-treesupermatrix-treePublic

   Snakemake workflow that concatenate MSA files into a supermatrix and calculates a maximum likelihood tree. Imported from my GitLab

   Python

5. rna-seq-2x-de-novo-assemblyrna-seq-2x-de-novo-assemblyPublic

   Snakemake workflow to de novo assemble transcriptomes with two software, Trinity and Shannon. Imported from my GitLab.

   Python

6. VCFpytoolsVCFpytoolsPublic

   Assortment of VCF processing scripts

   Python 1