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@dynverse

dynverse: benchmarking, constructing and interpreting single-cell trajectories

The dynverse is an open set of packages to benchmark, construct and interpret single-cell trajectories. See https://dynverse.org for an overview

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  1. dynodynoPublic

    Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

    R 185 34

  2. dynbenchmarkdynbenchmarkPublic

    Comparison of methods for trajectory inference on single-cell data 🥇

    R 218 44

  3. dynmethodsdynmethodsPublic

    A collection of 50+ trajectory inference methods within a common interface 📥📤

    R 131 28

  4. dyngendyngenPublic

    Simulating single-cell data using gene regulatory networks 📠

    HTML 78 6

  5. lmdslmdsPublic

    Landmark Multi-Dimensional Scaling

    R 8 1

Repositories

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Showing 10 of 129 repositories
  • dynwrap Public

    A common data format and inference environment for single-cell trajectories 📦

    dynverse/dynwrap’s past year of commit activity
    R 18 5 17 0 UpdatedNov 26, 2025
  • dynparam Public
    dynverse/dynparam’s past year of commit activity
    R 30 0 0 UpdatedNov 26, 2025
  • dynutils Public

    Common Functionality for the 'dynverse' Packages

    dynverse/dynutils’s past year of commit activity
    HTML 3 2 0 0 UpdatedSep 2, 2025
  • anndata Public

    Annotated multivariate observation data in R

    dynverse/anndata’s past year of commit activity
    R 51 4 6 0 UpdatedJun 3, 2025
  • dynverse/dynwrap_containers’s past year of commit activity
    R00 0 0 UpdatedApr 17, 2025
  • dyngen Public

    Simulating single-cell data using gene regulatory networks 📠

    dynverse/dyngen’s past year of commit activity
    HTML 78 6 19 1 UpdatedFeb 21, 2024
  • babelwhale Public

    Talking to Docker and Singularity containers

    dynverse/babelwhale’s past year of commit activity
    R 24 6 2 1 UpdatedDec 27, 2023
  • dynmethods Public

    A collection of 50+ trajectory inference methods within a common interface 📥📤

    dynverse/dynmethods’s past year of commit activity
    R 131 28 19 0 UpdatedDec 21, 2023
  • lmds Public

    Landmark Multi-Dimensional Scaling

    dynverse/lmds’s past year of commit activity
    R 8 1 2 0 UpdatedSep 22, 2023
  • dynbenchmark Public

    Comparison of methods for trajectory inference on single-cell data 🥇

    dynverse/dynbenchmark’s past year of commit activity
    R 218 44 4 0 UpdatedAug 30, 2023

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