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1. cgroza/GraffiTEcgroza/GraffiTEPublic

   GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

   R 175 9

2. TE-AidTE-AidPublic

   Annotation helper tool for the manual curation of transposable element consensus sequences

   R 47 8

3. dnaPipeTEdnaPipeTEPublic

   dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is…

   Dockerfile 54 11

4. dnaPT_utilsdnaPT_utilsPublic

   A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3

   Shell 6 1

5. TypeTETypeTEPublic

   Genotyping of segregating mobile elements insertions

   Perl 19 1

6. typereftyperefPublic

   Bi-allelic genotyping of reference transposable elements

   Python 1