Dr. Beiko's Lab

15 followers
Dalhousie University, Halifax, Nova Scotia
http://kiwi.cs.dal.ca/~beiko/

Popular repositoriesLoading

gengisgengisPublic
GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environm…
C++ 29 13
mimb_16Smimb_16SPublic
Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology
Shell 26 8
aretearetePublic
AMR/VF LGT focused bacterial genomics analysis workflow
Python 26 7
anankeanankePublic
Ananke: Clustering marker gene data by time-series patterns
Python 10 2
AMRtimeAMRtimePublic
Tool to predict the presence of antimicrobial resistance in clinical metagenomes
Python 8 2
MEGASATMEGASATPublic
High-throughput analysis of targeted microsatellite sequences.
Perl 5 3

Repositories

Showing 10 of 34 repositories

sarand Public
To extract AMR genes and their neighborhood
beiko-lab/sarand’s past year of commit activity
Python 3GPL-3.0 5 1 0 UpdatedApr 16, 2025
arete Public
AMR/VF LGT focused bacterial genomics analysis workflow
beiko-lab/arete’s past year of commit activity
Python 26MIT 7 3 0 UpdatedApr 5, 2025
amr_name_datasets Public
Scripts and supplementary files for Beiko et al., "Inconsistent naming of carbapenemase1 and colistin-resistance genes"
beiko-lab/amr_name_datasets’s past year of commit activity
0MIT0 0 0 UpdatedDec 19, 2024
evolCCM Public
R package for CCM (Community Coevolution Model)
beiko-lab/evolCCM’s past year of commit activity
R0GPL-3.00 1 0 UpdatedOct 28, 2024
ARETE-page Public
Static website for ARETE project information
beiko-lab/ARETE-page’s past year of commit activity
HTML0Apache-2.00 0 0 UpdatedMar 5, 2024
Indizio Public
A visual analytics tool to investigate correlated data structures using heatmaps, networks, and network statistics.
beiko-lab/Indizio’s past year of commit activity
Python0MIT 2 5 1 UpdatedNov 9, 2023
sarandV0 Public
beiko-lab/sarandV0’s past year of commit activity
Python0GPL-3.00 2 0 UpdatedAug 31, 2023
AMRtime Public
Tool to predict the presence of antimicrobial resistance in clinical metagenomes
beiko-lab/AMRtime’s past year of commit activity
Python 8MIT 2 2 0 UpdatedMay 19, 2023
CBW2021_Module2_16S_Analysis Public
beiko-lab/CBW2021_Module2_16S_Analysis’s past year of commit activity
Shell 2 5 0 0 UpdatedDec 5, 2022
DNA_encoders Public
beiko-lab/DNA_encoders’s past year of commit activity
Python 1MIT0 0 0 UpdatedOct 12, 2022