- Notifications
You must be signed in to change notification settings - Fork28
Python 3 framework to facilitate verification, validation and uncertainty quantification (VVUQ) for a wide variety of simulations.
License
LGPL-3.0, GPL-3.0 licenses found
Licenses found
UCL-CCS/EasyVVUQ
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
The aim of EasyVVUQ is to facilitate verification, validation anduncertainty quantification (VVUQ) for a wide variety ofsimulations. While very convenient for simple cases, EasyVVUQ is particularly well suited in situations where the simulations are computationally expensive,heterogeneous computing resources are necessary, the sampling space is very large or book-keeping is prohibitivelycomplex. It coordinates execution using an efficient database, it is fault tolerant and all progress can be saved.
Here are some examples of questions EasyVVUQ can answer about your code:
- Given the uncertainties in input parameters, what is the distribution of the output?
- What percentage of the output variance each input parameter contributes?
It also lets you construct surrogate models that are cheaper to evaluate than the complete simulation.
The high-level overview of the library is available at ourreadthedocs.
For the quick start with EasyVVUQ we recommend to check our basic interactive tutorial availablehere.
Available analysis and sampling methods:
- Polynomial Chaos Expansion
- Stochastic Collocation
- Dimension-adaptive Stochastic Collocation for high-dimensional inputs (incl notebook in
./tutorials
andtheoretical tutorial) - Simplex Stochastic Collocation for irregular outputs (incl notebook in
./tutorials
andarticle) - Monte Carlo Sensitivity Analysis
- Markov-Chain Monte Carlo
EasyVVUQ also supports building surrogate models using:
- Polynomial Chaos Expansion
- Stochastic Collocation
- Gaussian Processes
Supported computing resources:
- Traditional clusters
- Kubernetes clusters
The easiest way to get familiar with the provided functionality is to follow the tutorials (*.ipynb files) in ourBinder.
To use the library you will need Python 3.7+.
If you are unsure of the version of python your defaultpip
works for type:
pip --version
If the output ends with(python 2.7)
you should replacepip
withpip3
in the following commands.
The following should fully install the library:
pip install easyvvuq
To upgrade the library use:
pip install easyvvuq --upgrade
Alternatively, you can manually install EasyVVUQ. Note: As above, you need to be sure you are installing forPython3
- if necessary replacepip
withpip3
andpython
withpython3
in the commands below.
- Clone the Repository:
git clone https://github.com/UCL-CCS/EasyVVUQ.git
- Install with Bash Script:
The installation of dependencies and testing have been automated using bash scriptinstall_EasyVVUQ.sh
included in the repository. To execute it:
cd EasyVVUQ/
Make bash script executable:
chmod +x install_EasyVVUQ.sh
Execute bash script:
bash install_EasyVVUQ.sh
Upon successful installation, the process will end with the following message:
EasyVVUQ installation and testing completed successfully!
- Set the
PYTHONPATH
Environment Variable After installation:
You may need to manually set the PYTHONPATH to ensure EasyVVUQ can be found by Python. This step is required if the library is installed locally within the repository using the provided venv.
While in EasyVVUQ directory, activate the virtual environment (Linux/macOS):
source venv/bin/activate
For Windows users, activate virtual environment using:
venv\Scripts\activate
ExportPYTHONPATH
:
export PYTHONPATH=$(pwd):$PYTHONPATH
ExportPYTHONPATH
site-packages according to your Python version (e.g., python3.10):
export PYTHONPATH=$(pwd)/venv/lib/python3.10/site-packages:$PYTHONPATH
Check PYTHONPATH:
python-c"import sys; print('\n'.join(sys.path))"
Clone the Repository:
git clone https://github.com/UCL-CCS/EasyVVUQ.git
Navigate to the EasyVVUQ directory:
cd EasyVVUQ
Create and Activate Virtual Environment:
Using a virtual environment isolates EasyVVUQ's dependencies and prevents conflicts with other Python projects.
You can create a Python Virtual Environment inside EasyVVUQ directory or outside it. Git is set to ignore venv
python3 -m venv venv
Activate the virtual environment (Linux/macOS):
source venv/bin/activate
Install Required Packages using requirements.txt
pip install -r requirements.txt
Install EasyVVUQ in Editable Mode in Virtual Environment:
pip install -e .
The
-e
flag (editable mode) means any changes you make to the EasyVVUQ source code will be immediately reflected without needing to reinstall.To see easyvvuq in the list of the installed packages in the virtual environment:
pip list
Installation Verification:
After installation, verify the installation:
python-c"import easyvvuq; print('EasyVVUQ version:', easyvvuq.__version__)"
Output:
EasyVVUQ version: 1.2.3
You can find the EasyVVUQ API documentation on ourGitHub Pages.
Richardson, R A, Wright, D W, Edeling, W, Jancauskas, V, Lakhlili, J and Coveney, P V.2020 EasyVVUQ: A Library for Verification, Validation and Uncertainty Quantification in High Performance Computing.Journal of Open Research Software, 8: 11.DOI: 10.5334/jors.303.
Wright, D.W., Richardson, R.A., Edeling, W., Lakhlili, J., Sinclair, R.C., Jancauskas, V., Suleimenova, D., Bosak, B., Kulczewski, M., Piontek, T., Kopta, P., Chirca, I., Arabnejad, H., Luk, O.O., Hoenen, O., Weglarz, J., Crommelin, D., Groen, D. and Coveney, P.V. (2020), Building Confidence in Simulation: Applications of EasyVVUQ. Adv. Theory Simul., 3: 1900246.DOI: 10.1002/adts.201900246.
Development was funded by the EU Horizon 2020 projectVECMA.
About
Python 3 framework to facilitate verification, validation and uncertainty quantification (VVUQ) for a wide variety of simulations.