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1. parklab/emsarparklab/emsarPublic

   EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)

   C 8 1

2. 4dn-dcic/tibanna4dn-dcic/tibannaPublic

   Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ …

   Python 69 28

3. 4dn-dcic/pairix4dn-dcic/pairixPublic

   1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

   C 88 14

4. 4dn-dcic/Rpairix4dn-dcic/RpairixPublic

   R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text file

   C 8 4

5. 4dn-dcic/docker-4dn-hic4dn-dcic/docker-4dn-hicPublic

   Docker for 4DN Hi-C processing pipeline

   Common Workflow Language 59 18

6. parklab/NGSCheckMateparklab/NGSCheckMatePublic

   Software program for checking sample matching for NGS data

   Python 129 51