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1. DeepSliceDeepSlicePublic

   A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

   Python 91 20

2. brainglobe/brainglobe-ccf-translatorbrainglobe/brainglobe-ccf-translatorPublic

   A tool for translating between common coordinate frameworks using deformation matrices.

   Python 5

3. Neural-Systems-at-UIO/PyNutilNeural-Systems-at-UIO/PyNutilPublic

   Python library for brain-wide quantification and spatial analysis.

   Python 6 1

4. DLC_ROI_toolDLC_ROI_toolPublic

   A tool for drawing ROIs on videos and analysing deeplabcut videos.

   Python 33 7