scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

Deep learning framework for proteomics

A fully automated data processing and analysis system for mass spectrometry experiments.

modular & open DIA search

Shared non-production code for AlphaX packages

An open-source Python package to unify raw MS data accession and storage.

Infrastructure of AlphaX ecosystem

Python Package for the downstream analysis of mass-spectrometry-based proteomics data

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

An open-source Python package for accurate and sensitive peptide and protein quantification.