combatTB

Comprehensive Bacterial Analytical ToolKit for Tuberculosis (TB) Research (and related projects)

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combat-tb-neodbcombat-tb-neodbPublic
🐳 combatTB Neo4j Database
HTML 1 1
tbvcfreporttbvcfreportPublic
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
Python 2 2
combattbmodelcombattbmodelPublic
COMBAT-TB model is a Chado inspired graph model for genome annotation.
Python 2 1
irida-galaxy-deployirida-galaxy-deployPublic
🐳 Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform
HTML 3 4
neo4j-galaxy-ieneo4j-galaxy-iePublic
🐳 Neo4j Galaxy IE
Shell 2
tb_variant_filtertb_variant_filterPublic
A tool for filtering VCF files (relative to M. tuberculosis H37Rv)
Python 6 1

Repositories

Showing 10 of 29 repositories

tbvcfreport Public
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
COMBAT-TB/tbvcfreport’s past year of commit activity
Python 2GPL-3.0 2 1 (1 issue needs help) 0 UpdatedJun 7, 2024
tb_variant_filter Public
A tool for filtering VCF files (relative to M. tuberculosis H37Rv)
COMBAT-TB/tb_variant_filter’s past year of commit activity
Python 6GPL-3.0 1 4 1 UpdatedNov 21, 2023
deploy_explorer_neodb Public
COMBAT-TB/deploy_explorer_neodb’s past year of commit activity
Python0GPL-3.00 0 0 UpdatedMay 20, 2023
vcf2neo Public
A tool to import SnpEff annotated files to a Neo4j Graph database
COMBAT-TB/vcf2neo’s past year of commit activity
Python 3GPL-3.0 2 0 3 UpdatedDec 8, 2022
tb2neo Public
A tool to aggregate and load TB data to Neo4j
COMBAT-TB/tb2neo’s past year of commit activity
Python 1GPL-3.00 3 (2 issues need help) 3 UpdatedDec 8, 2022
combat-tb.github.io Public
COMBAT-TB Website
COMBAT-TB/combat-tb.github.io’s past year of commit activity
CSS0 2 0 0 UpdatedAug 31, 2022
irida-galaxy-deploy Public
🐳 Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform
COMBAT-TB/irida-galaxy-deploy’s past year of commit activity
HTML 3Apache-2.0 4 4 0 UpdatedAug 11, 2022
irida-plugin-builder Public
Build an IRIDA plugin
COMBAT-TB/irida-plugin-builder’s past year of commit activity
Shell 1Apache-2.00 0 0 UpdatedMay 22, 2022
irida-plugin-tb-sample-report Public
M. tuberculosis Variant and Drug Resistance Analysis
COMBAT-TB/irida-plugin-tb-sample-report’s past year of commit activity
Java0Apache-2.00 0 0 UpdatedSep 28, 2021
combattbworkbench-docs Public
COMBAT-TB/combattbworkbench-docs’s past year of commit activity
0CC-BY-4.00 0 0 UpdatedSep 27, 2021