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easierData
This is thereleased version of easierData; for the devel version, seeeasierData.
easier internal data and exemplary dataset from IMvigor210CoreBiologies package
Bioconductor version: Release (3.22)
Access to internal data required for the functional performance of easier package and exemplary bladder cancer dataset with both processed RNA-seq data and information on response to ICB therapy generated by Mariathasan et al. "TGF-B attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells", published in Nature, 2018 [doi:10.1038/nature25501](https://doi.org/10.1038/nature25501). The data is made available via [`IMvigor210CoreBiologies`](http://research-pub.gene.com/IMvigor210CoreBiologies/) package under the CC-BY license.
Author: Oscar Lapuente-Santana [aut, cre]
ORCID: 0000-0003-1995-8393, Federico Marini [aut] ORCID: 0000-0003-3252-7758, Arsenij Ustjanzew [aut] ORCID: 0000-0002-1014-4521, Francesca Finotello [aut] ORCID: 0000-0003-0712-4658, Federica Eduati [aut] ORCID: 0000-0002-7822-3867
Maintainer: Oscar Lapuente-Santana <o.lapuente.santana at tue.nl>
citation("easierData")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("easierData")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("easierData")| easier data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CancerData,ExperimentData,ExperimentHub,ImmunoOncologyData,RNASeqData,ReproducibleResearch |
| Version | 1.16.0 |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.1.0) |
| Imports | ExperimentHub,AnnotationHub, utils,SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown,BiocStyle,testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | easier |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | easierData_1.16.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/easierData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/easierData |
| Package Short Url | https://bioconductor.org/packages/easierData/ |
| Package Downloads Report | Download Stats |