clustifyrdatahub

This is thereleased version of clustifyrdatahub; for the devel version, seeclustifyrdatahub.

External data sets for clustifyr in ExperimentHub

DOI: 10.18129/B9.bioc.clustifyrdatahub

Bioconductor version: Release (3.22)

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut] ORCID: 0000-0001-8183-4549, Kent Riemondy [aut, cre] ORCID: 0000-0003-0750-1273, RNA Bioscience Initiative [fnd], Austin Gillen [ctb] ORCID: 0000-0003-2928-6308, Jay Hesselberth [ctb] ORCID: 0000-0002-6299-179X, Sidhant Puntambekar [ctb]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Citation (from within R, entercitation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")

clustifyrdatahub	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData,ExperimentHub,ExpressionData,MicroarrayData,PackageTypeData,RNASeqData,SequencingData,SingleCellData
Version	1.20.0
License	MIT + fileLICENSE
Depends	R (>= 4.0),ExperimentHub
Imports	utils
System Requirements
URL	https://rnabioco.github.io/clustifyrdatahub/
Bug Reports	https://github.com/rnabioco/clustifyrdatahub/issues

Suggests	clustifyr,Seurat,usethis,rmarkdown,knitr,tidyr,BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package	clustifyrdatahub_1.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clustifyrdatahub
Package Short Url	https://bioconductor.org/packages/clustifyrdatahub/
Package Downloads Report	Download Stats

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