TENET.ExperimentHub

This is thereleased version of TENET.ExperimentHub; for the devel version, seeTENET.ExperimentHub.

Experiment data for the TENET package

DOI: 10.18129/B9.bioc.TENET.ExperimentHub

Bioconductor version: Release (3.22)

ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.

Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] ORCID: 0000-0002-7639-0549, Zexun Wu [aut] ORCID: 0000-0003-2566-1326, Ethan Nelson-Moore [aut] ORCID: 0009-0001-6903-9232, Suhn Rhie [aut] ORCID: 0000-0002-5522-5296

Maintainer: Rhie Lab at the University of Southern California <rhielab at gmail.com>

Citation (from within R, entercitation("TENET.ExperimentHub")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("TENET.ExperimentHub")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENET.ExperimentHub")

Using the TENET.ExperimentHub datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BreastCancerData,CancerData,CellCulture,ExperimentData,ExperimentHub,ExpressionData,Genome,Homo_sapiens_Data,MethylationArrayData,MicroarrayData,RNASeqData,Tissue
Version	1.2.0
License	GPL-2
Depends	R (>= 4.5),ggplot2 (>= 4.0)
Imports	ExperimentHub,SummarizedExperiment,MultiAssayExperiment,GenomicRanges, methods
System Requirements
URL	https://github.com/rhielab/TENET.ExperimentHub
Bug Reports	https://github.com/rhielab/TENET.ExperimentHub/issues

Suggests	TENET,ExperimentHubData,testthat (>= 3.0.0),BiocManager,knitr,rmarkdown,BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	TENET
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package	TENET.ExperimentHub_1.2.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TENET.ExperimentHub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENET.ExperimentHub
Package Short Url	https://bioconductor.org/packages/TENET.ExperimentHub/
Package Downloads Report	Download Stats

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