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RNAseqData.HNRNPC.bam.chr14
This is thereleased version of RNAseqData.HNRNPC.bam.chr14; for the devel version, seeRNAseqData.HNRNPC.bam.chr14.
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
Bioconductor version: Release (3.22)
The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("RNAseqData.HNRNPC.bam.chr14")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("RNAseqData.HNRNPC.bam.chr14")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ArrayExpress,ExperimentData,GEO,Genome,Homo_sapiens_Data,NCI,RNASeqData,SequencingData |
| Version | 0.48.0 |
| License | LGPL |
| Depends | |
| Imports | |
| System Requirements | |
| URL | http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/ |
See More
| Suggests | GenomicAlignments,BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | sequencing |
| Imports Me | |
| Suggests Me | BiocParallel,cigarillo,GenomicAlignments,GenomicFiles,GenomicRanges,roar,Rsamtools,SplicingGraphs |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | RNAseqData.HNRNPC.bam.chr14_0.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14 |
| Package Short Url | https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/ |
| Package Downloads Report | Download Stats |